Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC107956.1-201ENST00000494359 873 ntBASIC18.27■□□□□ 0.52
PCDH1Q08174 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 AC233702.5-201ENST00000584107 538 ntBASIC18.27■□□□□ 0.52
PCDH1Q08174 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 AL512353.2-201ENST00000448759 1962 ntBASIC18.27■□□□□ 0.52
PCDH1Q08174 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDH1Q08174 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.27■□□□□ 0.51
PCDH1Q08174 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH1Q08174 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH1Q08174 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.27■□□□□ 0.51
PCDH1Q08174 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
PCDH1Q08174 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH1Q08174 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDH1Q08174 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PCDH1Q08174 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH1Q08174 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH1Q08174 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH1Q08174 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDH1Q08174 CD177P1-201ENST00000606252 935 ntBASIC18.26■□□□□ 0.51
PCDH1Q08174 AP001412.1-201ENST00000608405 714 ntBASIC18.26■□□□□ 0.51
PCDH1Q08174 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 KRT8P32-201ENST00000512863 1461 ntBASIC18.26■□□□□ 0.51
PCDH1Q08174 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH1Q08174 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH1Q08174 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH1Q08174 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
PCDH1Q08174 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 FAM207BP-201ENST00000447172 505 ntBASIC18.25■□□□□ 0.51
PCDH1Q08174 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH1Q08174 DGCR10-201ENST00000609839 495 ntBASIC18.25■□□□□ 0.51
PCDH1Q08174 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDH1Q08174 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 AC096733.2-201ENST00000609937 1394 ntBASIC18.25■□□□□ 0.51
PCDH1Q08174 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PCDH1Q08174 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PCDH1Q08174 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PCDH1Q08174 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH1Q08174 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH1Q08174 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PCDH1Q08174 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH1Q08174 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDH1Q08174 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
PCDH1Q08174 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDH1Q08174 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PCDH1Q08174 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PCDH1Q08174 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PCDH1Q08174 AC068587.9-201ENST00000641814 219 ntBASIC18.24■□□□□ 0.51
PCDH1Q08174 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH1Q08174 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms