Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGCS2P54868 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
HMGCS2P54868 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGCS2P54868 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.85■■□□□ 1.09
HMGCS2P54868 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGCS2P54868 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGCS2P54868 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
HMGCS2P54868 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
HMGCS2P54868 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
HMGCS2P54868 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGCS2P54868 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS2P54868 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGCS2P54868 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
HMGCS2P54868 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
HMGCS2P54868 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 TSPY22P-201ENST00000427496 604 ntBASIC21.84■■□□□ 1.09
HMGCS2P54868 CHCHD2P8-201ENST00000429873 447 ntBASIC21.84■■□□□ 1.09
HMGCS2P54868 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.84■■□□□ 1.09
HMGCS2P54868 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
HMGCS2P54868 AC111152.3-201ENST00000569699 673 ntBASIC21.84■■□□□ 1.09
HMGCS2P54868 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.84■■□□□ 1.09
HMGCS2P54868 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.84■■□□□ 1.09
HMGCS2P54868 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGCS2P54868 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.84■■□□□ 1.09
HMGCS2P54868 RCC2P3-201ENST00000418112 1537 ntBASIC21.84■■□□□ 1.09
HMGCS2P54868 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGCS2P54868 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGCS2P54868 AC008556.1-201ENST00000610908 2040 ntBASIC21.84■■□□□ 1.09
HMGCS2P54868 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.83■■□□□ 1.09
HMGCS2P54868 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HMGCS2P54868 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.83■■□□□ 1.09
HMGCS2P54868 RNF126P1-202ENST00000569893 925 ntBASIC21.83■■□□□ 1.09
HMGCS2P54868 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGCS2P54868 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
HMGCS2P54868 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.83■■□□□ 1.09
HMGCS2P54868 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGCS2P54868 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGCS2P54868 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.83■■□□□ 1.09
HMGCS2P54868 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
HMGCS2P54868 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.83■■□□□ 1.08
HMGCS2P54868 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
HMGCS2P54868 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGCS2P54868 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGCS2P54868 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGCS2P54868 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGCS2P54868 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGCS2P54868 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.82■■□□□ 1.08
HMGCS2P54868 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.82■■□□□ 1.08
HMGCS2P54868 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.82■■□□□ 1.08
HMGCS2P54868 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.82■■□□□ 1.08
HMGCS2P54868 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.82■■□□□ 1.08
HMGCS2P54868 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGCS2P54868 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.82■■□□□ 1.08
HMGCS2P54868 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HMGCS2P54868 AL109659.2-201ENST00000606809 1674 ntBASIC21.82■■□□□ 1.08
HMGCS2P54868 TEX21P-204ENST00000641479 1693 ntBASIC21.82■■□□□ 1.08
HMGCS2P54868 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
HMGCS2P54868 KRT18P1-202ENST00000452408 1331 ntBASIC21.81■■□□□ 1.08
HMGCS2P54868 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.81■■□□□ 1.08
HMGCS2P54868 AL512353.2-201ENST00000448759 1962 ntBASIC21.81■■□□□ 1.08
HMGCS2P54868 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
HMGCS2P54868 KRT18P23-201ENST00000435622 1283 ntBASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms