Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL18A1P39060 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC25.01■■□□□ 1.59
COL18A1P39060 AC099336.1-202ENST00000602961 463 ntBASIC25.01■■□□□ 1.59
COL18A1P39060 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL18A1P39060 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL18A1P39060 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.01■■□□□ 1.59
COL18A1P39060 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC25■■□□□ 1.59
COL18A1P39060 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC25■■□□□ 1.59
COL18A1P39060 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC25■■□□□ 1.59
COL18A1P39060 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 VPS51-217ENST00000639871 243 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 AL512353.2-201ENST00000448759 1962 ntBASIC25■■□□□ 1.59
COL18A1P39060 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC25■■□□□ 1.59
COL18A1P39060 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC25■■□□□ 1.59
COL18A1P39060 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 AC091304.2-201ENST00000564639 760 ntBASIC25■■□□□ 1.59
COL18A1P39060 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
COL18A1P39060 REXO1L6P-202ENST00000619970 1078 ntBASIC25■■□□□ 1.59
COL18A1P39060 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC25■■□□□ 1.59
COL18A1P39060 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
COL18A1P39060 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC24.99■■□□□ 1.59
COL18A1P39060 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
COL18A1P39060 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.99■■□□□ 1.59
COL18A1P39060 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC24.99■■□□□ 1.59
COL18A1P39060 KATNBL1P6-202ENST00000562413 1466 ntBASIC24.99■■□□□ 1.59
COL18A1P39060 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.99■■□□□ 1.59
COL18A1P39060 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC24.99■■□□□ 1.59
COL18A1P39060 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC24.99■■□□□ 1.59
COL18A1P39060 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
COL18A1P39060 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL18A1P39060 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC24.98■■□□□ 1.59
COL18A1P39060 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC24.98■■□□□ 1.59
COL18A1P39060 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC24.98■■□□□ 1.59
COL18A1P39060 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC24.98■■□□□ 1.59
COL18A1P39060 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 AC006538.3-201ENST00000612495 578 ntBASIC24.98■■□□□ 1.59
COL18A1P39060 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC24.98■■□□□ 1.59
COL18A1P39060 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC24.98■■□□□ 1.59
COL18A1P39060 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC24.98■■□□□ 1.59
COL18A1P39060 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 AL662844.1-201ENST00000546340 181 ntBASIC24.98■■□□□ 1.59
COL18A1P39060 AL353801.3-201ENST00000609898 542 ntBASIC24.98■■□□□ 1.59
COL18A1P39060 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL18A1P39060 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC24.98■■□□□ 1.59
COL18A1P39060 Z82202.1-201ENST00000623446 1880 ntBASIC24.97■■□□□ 1.59
COL18A1P39060 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL18A1P39060 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC24.97■■□□□ 1.59
COL18A1P39060 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
COL18A1P39060 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC24.97■■□□□ 1.59
COL18A1P39060 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC24.97■■□□□ 1.59
COL18A1P39060 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC24.97■■□□□ 1.59
COL18A1P39060 SAPCD2P3-201ENST00000455031 850 ntBASIC24.97■■□□□ 1.59
COL18A1P39060 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC24.97■■□□□ 1.59
COL18A1P39060 AC090616.6-201ENST00000582640 721 ntBASIC24.97■■□□□ 1.59
COL18A1P39060 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
COL18A1P39060 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC24.97■■□□□ 1.59
COL18A1P39060 PBK-203ENST00000522944 1499 ntTSL 2 BASIC24.97■■□□□ 1.59
COL18A1P39060 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL18A1P39060 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC24.96■■□□□ 1.59
COL18A1P39060 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL18A1P39060 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.96■■□□□ 1.59
COL18A1P39060 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL18A1P39060 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
COL18A1P39060 IGHGP-201ENST00000390555 1178 ntBASIC24.96■■□□□ 1.59
COL18A1P39060 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms