Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CIITAP33076 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.32■■□□□ 1
CIITAP33076 BX664615.1-201ENST00000443558 458 ntBASIC21.32■■□□□ 1
CIITAP33076 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.32■■□□□ 1
CIITAP33076 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.32■■□□□ 1
CIITAP33076 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CIITAP33076 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
CIITAP33076 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CIITAP33076 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CIITAP33076 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.31■■□□□ 1
CIITAP33076 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.31■■□□□ 1
CIITAP33076 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.31■■□□□ 1
CIITAP33076 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.31■■□□□ 1
CIITAP33076 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CIITAP33076 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.31■■□□□ 1
CIITAP33076 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.31■■□□□ 1
CIITAP33076 TMPOP1-202ENST00000424642 1267 ntBASIC21.31■■□□□ 1
CIITAP33076 ATP5G1P1-201ENST00000448724 379 ntBASIC21.31■■□□□ 1
CIITAP33076 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.31■■□□□ 1
CIITAP33076 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.31■■□□□ 1
CIITAP33076 MIR3180-5-201ENST00000583743 153 ntBASIC21.31■■□□□ 1
CIITAP33076 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CIITAP33076 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.31■■□□□ 1
CIITAP33076 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CIITAP33076 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.3■■□□□ 1
CIITAP33076 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.3■■□□□ 1
CIITAP33076 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.3■■□□□ 1
CIITAP33076 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.3■■□□□ 1
CIITAP33076 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.3■■□□□ 1
CIITAP33076 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.3■■□□□ 1
CIITAP33076 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.3■■□□□ 1
CIITAP33076 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.3■■□□□ 1
CIITAP33076 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.3■■□□□ 1
CIITAP33076 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.29■■□□□ 1
CIITAP33076 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.29■■□□□ 1
CIITAP33076 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.29■■□□□ 1
CIITAP33076 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.29■■□□□ 1
CIITAP33076 AC104076.2-201ENST00000448912 469 ntBASIC21.29■■□□□ 1
CIITAP33076 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CIITAP33076 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CIITAP33076 AC006011.2-201ENST00000621313 1158 ntBASIC21.29■■□□□ 1
CIITAP33076 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.29■■□□□ 1
CIITAP33076 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.29■■□□□ 1
CIITAP33076 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.29■■□□□ 1
CIITAP33076 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.29■■□□□ 1
CIITAP33076 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.29■■□□□ 1
CIITAP33076 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.29■■□□□ 1
CIITAP33076 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms