Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
COL8A1P27658 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL8A1P27658 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL8A1P27658 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.52■□□□□ 0.23
COL8A1P27658 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
COL8A1P27658 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.51■□□□□ 0.23
COL8A1P27658 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.51■□□□□ 0.23
COL8A1P27658 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 AF238378.1-201ENST00000526806 358 ntBASIC16.51■□□□□ 0.23
COL8A1P27658 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.51■□□□□ 0.23
COL8A1P27658 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL8A1P27658 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.51■□□□□ 0.23
COL8A1P27658 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
COL8A1P27658 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL8A1P27658 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL8A1P27658 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.5■□□□□ 0.23
COL8A1P27658 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.5■□□□□ 0.23
COL8A1P27658 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 AC027796.2-201ENST00000575326 344 ntBASIC16.5■□□□□ 0.23
COL8A1P27658 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 AC055717.3-201ENST00000622967 595 ntBASIC16.5■□□□□ 0.23
COL8A1P27658 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.5■□□□□ 0.23
COL8A1P27658 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.5■□□□□ 0.23
COL8A1P27658 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.5■□□□□ 0.23
COL8A1P27658 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
COL8A1P27658 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL8A1P27658 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.49■□□□□ 0.23
COL8A1P27658 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL8A1P27658 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.49■□□□□ 0.23
COL8A1P27658 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 AL157888.1-201ENST00000631930 593 ntBASIC16.49■□□□□ 0.23
COL8A1P27658 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.49■□□□□ 0.23
COL8A1P27658 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.49■□□□□ 0.23
COL8A1P27658 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.49■□□□□ 0.23
COL8A1P27658 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL8A1P27658 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL8A1P27658 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.48■□□□□ 0.23
COL8A1P27658 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 AC244015.2-201ENST00000616358 1861 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
COL8A1P27658 MIR662-201ENST00000384847 95 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms