Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB3O75112 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB3O75112 CYP2D8P-201ENST00000433633 1490 ntBASIC17.82■□□□□ 0.44
LDB3O75112 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB3O75112 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB3O75112 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.81■□□□□ 0.44
LDB3O75112 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.81■□□□□ 0.44
LDB3O75112 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.81■□□□□ 0.44
LDB3O75112 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.81■□□□□ 0.44
LDB3O75112 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LDB3O75112 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDB3O75112 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
LDB3O75112 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LDB3O75112 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 AC018445.3-201ENST00000624177 1945 ntBASIC17.8■□□□□ 0.44
LDB3O75112 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.8■□□□□ 0.44
LDB3O75112 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.8■□□□□ 0.44
LDB3O75112 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.8■□□□□ 0.44
LDB3O75112 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
LDB3O75112 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.8■□□□□ 0.44
LDB3O75112 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDB3O75112 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.8■□□□□ 0.44
LDB3O75112 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
LDB3O75112 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.79■□□□□ 0.44
LDB3O75112 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.79■□□□□ 0.44
LDB3O75112 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LDB3O75112 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDB3O75112 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.78■□□□□ 0.44
LDB3O75112 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDB3O75112 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms