Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LMX1BO60663 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.65■□□□□ 0.26
LMX1BO60663 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LMX1BO60663 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 AL031598.1-201ENST00000561511 1773 ntBASIC16.65■□□□□ 0.26
LMX1BO60663 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.65■□□□□ 0.26
LMX1BO60663 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.65■□□□□ 0.26
LMX1BO60663 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.65■□□□□ 0.26
LMX1BO60663 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.65■□□□□ 0.26
LMX1BO60663 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
LMX1BO60663 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.65■□□□□ 0.26
LMX1BO60663 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 AC020763.4-201ENST00000623414 4170 ntBASIC16.65■□□□□ 0.26
LMX1BO60663 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
LMX1BO60663 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
LMX1BO60663 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1BO60663 WIZP1-201ENST00000531444 2299 ntBASIC16.65■□□□□ 0.26
LMX1BO60663 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.64■□□□□ 0.26
LMX1BO60663 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
LMX1BO60663 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
LMX1BO60663 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
LMX1BO60663 RCN1P1-201ENST00000400413 996 ntBASIC16.64■□□□□ 0.25
LMX1BO60663 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 AL355355.2-201ENST00000442321 338 ntBASIC16.64■□□□□ 0.25
LMX1BO60663 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 AC012306.2-201ENST00000609350 630 ntBASIC16.64■□□□□ 0.25
LMX1BO60663 AC026471.5-201ENST00000615068 467 ntBASIC16.64■□□□□ 0.25
LMX1BO60663 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.64■□□□□ 0.25
LMX1BO60663 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LMX1BO60663 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LMX1BO60663 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1BO60663 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LMX1BO60663 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.63■□□□□ 0.25
LMX1BO60663 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.63■□□□□ 0.25
LMX1BO60663 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1BO60663 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LMX1BO60663 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LMX1BO60663 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
LMX1BO60663 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 TUBB8P6-201ENST00000436895 1288 ntBASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms