Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.73■□□□□ 0.27
SGCEO43556 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.73■□□□□ 0.27
SGCEO43556 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.73■□□□□ 0.27
SGCEO43556 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.73■□□□□ 0.27
SGCEO43556 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.73■□□□□ 0.27
SGCEO43556 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.73■□□□□ 0.27
SGCEO43556 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SGCEO43556 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.73■□□□□ 0.27
SGCEO43556 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SGCEO43556 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 AL049812.1-201ENST00000432563 2267 ntBASIC16.72■□□□□ 0.27
SGCEO43556 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.72■□□□□ 0.27
SGCEO43556 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.72■□□□□ 0.27
SGCEO43556 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 ABHD17AP1-201ENST00000358206 933 ntBASIC16.72■□□□□ 0.27
SGCEO43556 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.72■□□□□ 0.27
SGCEO43556 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SGCEO43556 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 AL158047.1-201ENST00000445918 881 ntBASIC16.72■□□□□ 0.27
SGCEO43556 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SGCEO43556 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 AC098590.1-201ENST00000468126 897 ntBASIC16.72■□□□□ 0.27
SGCEO43556 RPS2P4-201ENST00000476944 856 ntBASIC16.72■□□□□ 0.27
SGCEO43556 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.72■□□□□ 0.27
SGCEO43556 Z85996.1-201ENST00000494644 937 ntBASIC16.72■□□□□ 0.27
SGCEO43556 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.72■□□□□ 0.27
SGCEO43556 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.72■□□□□ 0.27
SGCEO43556 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 AF186192.3-201ENST00000583427 947 ntBASIC16.72■□□□□ 0.27
SGCEO43556 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.72■□□□□ 0.27
SGCEO43556 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SGCEO43556 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SGCEO43556 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 KRT16P1-201ENST00000399124 1418 ntBASIC16.71■□□□□ 0.27
SGCEO43556 AL135905.2-201ENST00000584934 1404 ntBASIC16.71■□□□□ 0.27
SGCEO43556 KRT8P41-201ENST00000533985 1514 ntBASIC16.71■□□□□ 0.27
SGCEO43556 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 FEM1AP3-201ENST00000403722 1741 ntBASIC16.71■□□□□ 0.27
SGCEO43556 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SGCEO43556 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.71■□□□□ 0.27
SGCEO43556 AC004980.1-204ENST00000429707 299 ntBASIC16.71■□□□□ 0.27
SGCEO43556 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 AC073195.1-201ENST00000607241 877 ntBASIC16.71■□□□□ 0.27
SGCEO43556 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.71■□□□□ 0.27
SGCEO43556 CR392000.1-201ENST00000624770 1228 ntBASIC16.71■□□□□ 0.27
SGCEO43556 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms