Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 HMGN2P9-201ENST00000476875 229 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RPS27P21-201ENST00000486977 252 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AC097473.1-201ENST00000508142 408 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU6-1114P-201ENST00000516022 107 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 ANP32BP3-201ENST00000559213 706 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.69□□□□□ -2.14
LIME1Q9H400 FRG2DP-202ENST00000566967 323 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.69□□□□□ -2.14
LIME1Q9H400 MIR5006-201ENST00000583027 110 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 MIR3935-201ENST00000583472 104 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AC078899.2-201ENST00000595282 212 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.69□□□□□ -2.14
LIME1Q9H400 MIR8081-201ENST00000611533 95 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.69□□□□□ -2.14
LIME1Q9H400 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
LIME1Q9H400 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
LIME1Q9H400 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LIME1Q9H400 SNORD114-6-201ENST00000364393 72 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 Y_RNA.529-201ENST00000384586 119 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 MIR320B2-201ENST00000408479 138 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 MTCYBP10-201ENST00000424905 650 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.68□□□□□ -2.14
LIME1Q9H400 AL353997.1-201ENST00000432936 108 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 IPO7P1-201ENST00000442031 636 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 SNRPEP8-201ENST00000442866 260 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AC093019.1-201ENST00000443135 252 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AL357134.1-201ENST00000445848 426 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AC007395.1-201ENST00000451333 677 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AC005840.1-201ENST00000498412 377 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 RNU2-34P-201ENST00000516534 121 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 Y_RNA.706-201ENST00000516933 99 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.68□□□□□ -2.14
LIME1Q9H400 AL355375.2-201ENST00000574825 175 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 MIR5089-201ENST00000580047 84 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 MIR5690-201ENST00000583739 73 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 MIR8070-201ENST00000616510 88 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AL590240.4-201ENST00000616908 390 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 AC022513.1-201ENST00000624512 117 ntBASIC1.68□□□□□ -2.14
LIME1Q9H400 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
LIME1Q9H400 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.68□□□□□ -2.14
LIME1Q9H400 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.68□□□□□ -2.14
LIME1Q9H400 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
LIME1Q9H400 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
LIME1Q9H400 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
LIME1Q9H400 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-661P-201ENST00000362409 107 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-545P-201ENST00000362681 104 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNA5SP493-201ENST00000364115 91 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-280P-201ENST00000364145 104 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-890P-201ENST00000384121 107 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-1026P-201ENST00000384465 108 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LIME1Q9H400 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LIME1Q9H400 MIR190B-201ENST00000401119 79 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 SUMO2P12-201ENST00000405924 140 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU4-62P-201ENST00000410125 130 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 AC139712.2-201ENST00000424302 339 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.67□□□□□ -2.14
LIME1Q9H400 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.67□□□□□ -2.14
LIME1Q9H400 RPL17P19-201ENST00000489069 552 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 AC067942.3-201ENST00000512025 362 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 SNORA25.15-201ENST00000516487 89 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 RNU6-856P-201ENST00000516959 98 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 UBL5P4-201ENST00000562584 236 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 SUB1P3-201ENST00000564581 315 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 AC004584.2-201ENST00000570407 410 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 AC007229.1-201ENST00000590455 412 ntBASIC1.67□□□□□ -2.14
LIME1Q9H400 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.67□□□□□ -2.14
LIME1Q9H400 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LIME1Q9H400 AL359851.1-201ENST00000569460 4997 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.66□□□□□ -2.14
LIME1Q9H400 RNU6-222P-201ENST00000362438 107 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 SNORD115-3-201ENST00000363100 82 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 Y_RNA.106-201ENST00000363189 100 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RNU5F-3P-201ENST00000363767 117 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 Y_RNA.364-201ENST00000365532 101 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RNU6-438P-201ENST00000365561 103 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RNU6-700P-201ENST00000391043 107 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RNU2-20P-201ENST00000410425 191 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.66□□□□□ -2.14
LIME1Q9H400 AL356379.1-201ENST00000414105 126 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 USP9YP16-201ENST00000430287 407 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 USP9YP23-201ENST00000455085 407 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 MTCO3P10-201ENST00000455912 772 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 Y_RNA.653-201ENST00000459091 95 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 AC091179.3-201ENST00000474761 144 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 AC093303.1-201ENST00000514549 295 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RNA5SP364-201ENST00000516938 78 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 Y_RNA.718-201ENST00000517110 102 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 RRN3P3-201ENST00000549207 578 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.66□□□□□ -2.14
LIME1Q9H400 AC090617.3-201ENST00000573670 475 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 SNORD11B-201ENST00000607707 90 ntBASIC1.66□□□□□ -2.14
LIME1Q9H400 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LIME1Q9H400 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LIME1Q9H400 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
LIME1Q9H400 MIR337-201ENST00000362281 93 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNU6-23P-201ENST00000363283 107 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNU6-975P-201ENST00000384296 105 ntBASIC1.65□□□□□ -2.15
LIME1Q9H400 RNU6-1235P-201ENST00000384559 107 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 158.9 ms