Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC011603.4-201ENST00000611325 277 ntBASIC3.33□□□□□ -1.88
UBE3DQ7Z6J8 AC090517.3-201ENST00000625170 141 ntBASIC3.33□□□□□ -1.88
UBE3DQ7Z6J8 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
UBE3DQ7Z6J8 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
UBE3DQ7Z6J8 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
UBE3DQ7Z6J8 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 MFSD8-233ENST00000641482 4860 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 SNORA20-201ENST00000384662 132 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 MIR1278-201ENST00000408753 81 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 AL135786.1-201ENST00000415892 214 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 AC008134.1-201ENST00000420943 193 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 AL358232.1-201ENST00000448030 501 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 SNORD65B-201ENST00000459126 73 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 SCARNA11.3-201ENST00000517276 130 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 AC109329.2-201ENST00000519658 482 ntBASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.32□□□□□ -1.88
UBE3DQ7Z6J8 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1235P-201ENST00000384559 107 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-383P-201ENST00000410864 94 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 AL035461.1-201ENST00000421490 332 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 ARF4P2-201ENST00000430209 526 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-498P-201ENST00000459468 107 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RPS27P26-201ENST00000494583 239 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-561P-201ENST00000516222 102 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-948P-201ENST00000516374 107 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 MIR3186-201ENST00000577404 85 ntBASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
UBE3DQ7Z6J8 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 SNORD45.3-201ENST00000363836 72 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 Y_RNA.251-201ENST00000364551 99 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 SNORA14A-201ENST00000364773 135 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 SNORD116-13-201ENST00000384408 92 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 AC245047.4-201ENST00000433189 144 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 AL357552.1-201ENST00000445254 415 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 HMGN2P7-201ENST00000456186 273 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 AC016925.1-201ENST00000458303 298 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 RPL23AP54-201ENST00000495129 419 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 RNA5SP20-201ENST00000515976 84 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-659P-201ENST00000516454 104 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 SNORA67.7-201ENST00000516664 135 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1234P-201ENST00000516877 103 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 MIR378D2-201ENST00000580636 98 ntBASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
UBE3DQ7Z6J8 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1180P-201ENST00000364935 107 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 SNORD17-201ENST00000390930 237 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 PTMAP2-201ENST00000397627 327 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 MICF-203ENST00000432679 129 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 AC025518.1-201ENST00000479856 347 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 Y_RNA.686-201ENST00000516548 134 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 MIR3158-1-201ENST00000583596 81 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 AL021707.8-201ENST00000609428 183 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 AL356274.2-201ENST00000624379 3752 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 ZNF702P-202ENST00000434269 1966 ntBASIC3.29□□□□□ -1.88
UBE3DQ7Z6J8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1325P-201ENST00000364905 105 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1056P-201ENST00000383996 107 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-1274P-201ENST00000384557 107 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RNU6-57P-201ENST00000411348 103 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 SNORA84-201ENST00000459229 133 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 AC010531.2-201ENST00000465012 153 ntBASIC3.28□□□□□ -1.88
UBE3DQ7Z6J8 RN7SL330P-201ENST00000469709 307 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms