Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSH5O43196 Y_RNA.42-201ENST00000362660 108 ntBASIC6.7□□□□□ -1.34
MSH5O43196 RNA5SP113-201ENST00000410486 84 ntBASIC6.7□□□□□ -1.34
MSH5O43196 snoU13.1-201ENST00000459157 104 ntBASIC6.7□□□□□ -1.34
MSH5O43196 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
MSH5O43196 AL020996.3-201ENST00000606617 222 ntBASIC6.7□□□□□ -1.34
MSH5O43196 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSH5O43196 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH5O43196 ZNF962P-201ENST00000443465 3140 ntBASIC6.7□□□□□ -1.34
MSH5O43196 MAPK10-263ENST00000641052 4307 ntBASIC6.69□□□□□ -1.34
MSH5O43196 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.69□□□□□ -1.34
MSH5O43196 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
MSH5O43196 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSH5O43196 AL596028.1-201ENST00000326971 197 ntBASIC6.69□□□□□ -1.34
MSH5O43196 SNORA48.4-201ENST00000391089 134 ntBASIC6.69□□□□□ -1.34
MSH5O43196 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC6.69□□□□□ -1.34
MSH5O43196 BX510359.1-201ENST00000456973 237 ntBASIC6.69□□□□□ -1.34
MSH5O43196 RN7SL244P-201ENST00000493405 297 ntBASIC6.69□□□□□ -1.34
MSH5O43196 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.69□□□□□ -1.34
MSH5O43196 MIR6780A-201ENST00000615089 68 ntBASIC6.69□□□□□ -1.34
MSH5O43196 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
MSH5O43196 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
MSH5O43196 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.68□□□□□ -1.34
MSH5O43196 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 RNY1P2-201ENST00000364820 117 ntBASIC6.68□□□□□ -1.34
MSH5O43196 RNA5SP479-201ENST00000364858 117 ntBASIC6.68□□□□□ -1.34
MSH5O43196 RPL18P10-201ENST00000425606 538 ntBASIC6.68□□□□□ -1.34
MSH5O43196 RPS29P29-201ENST00000456396 171 ntBASIC6.68□□□□□ -1.34
MSH5O43196 AL592156.1-201ENST00000508758 304 ntBASIC6.68□□□□□ -1.34
MSH5O43196 MIR3667-201ENST00000581025 74 ntBASIC6.68□□□□□ -1.34
MSH5O43196 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSH5O43196 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC6.68□□□□□ -1.34
MSH5O43196 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSH5O43196 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC6.67□□□□□ -1.34
MSH5O43196 MIR660-201ENST00000385235 97 ntBASIC6.67□□□□□ -1.34
MSH5O43196 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
MSH5O43196 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH5O43196 RNU6-856P-201ENST00000516959 98 ntBASIC6.67□□□□□ -1.34
MSH5O43196 AC079598.5-201ENST00000547460 117 ntBASIC6.67□□□□□ -1.34
MSH5O43196 AC079587.1-201ENST00000603846 277 ntBASIC6.67□□□□□ -1.34
MSH5O43196 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSH5O43196 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
MSH5O43196 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.67□□□□□ -1.34
MSH5O43196 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
MSH5O43196 LYST-202ENST00000389794 12985 ntTSL 5 BASIC6.66□□□□□ -1.34
MSH5O43196 A2MP1-204ENST00000566278 4130 ntBASIC6.66□□□□□ -1.34
MSH5O43196 snoU2-30.2-201ENST00000362805 70 ntBASIC6.66□□□□□ -1.34
MSH5O43196 RNA5SP428-201ENST00000365129 132 ntBASIC6.66□□□□□ -1.34
MSH5O43196 RNA5SP332-201ENST00000391063 115 ntBASIC6.66□□□□□ -1.34
MSH5O43196 HMGN2P18-201ENST00000450680 270 ntBASIC6.66□□□□□ -1.34
MSH5O43196 RNU6ATAC14P-201ENST00000516218 91 ntBASIC6.66□□□□□ -1.34
MSH5O43196 AC091042.1-201ENST00000579213 173 ntBASIC6.66□□□□□ -1.34
MSH5O43196 SNORD92-201ENST00000585078 85 ntBASIC6.66□□□□□ -1.34
MSH5O43196 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC6.66□□□□□ -1.34
MSH5O43196 MIR6839-201ENST00000620425 113 ntBASIC6.66□□□□□ -1.34
MSH5O43196 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
MSH5O43196 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
MSH5O43196 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC6.66□□□□□ -1.34
MSH5O43196 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH5O43196 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.65□□□□□ -1.34
MSH5O43196 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSH5O43196 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSH5O43196 ZNF209P-201ENST00000593450 2304 ntBASIC6.65□□□□□ -1.34
MSH5O43196 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.65□□□□□ -1.34
MSH5O43196 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSH5O43196 Y_RNA.207-201ENST00000364142 106 ntBASIC6.65□□□□□ -1.34
MSH5O43196 RNU6-913P-201ENST00000390913 95 ntBASIC6.65□□□□□ -1.34
MSH5O43196 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSH5O43196 RAC1P2-201ENST00000511164 579 ntBASIC6.65□□□□□ -1.34
MSH5O43196 AL356280.1-201ENST00000603614 379 ntBASIC6.65□□□□□ -1.34
MSH5O43196 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.65□□□□□ -1.34
MSH5O43196 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSH5O43196 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
MSH5O43196 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.35
MSH5O43196 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.65□□□□□ -1.35
MSH5O43196 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC6.65□□□□□ -1.35
MSH5O43196 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSH5O43196 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH5O43196 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH5O43196 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH5O43196 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH5O43196 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH5O43196 Y_RNA.283-201ENST00000364798 112 ntBASIC6.64□□□□□ -1.35
MSH5O43196 RPS29P10-201ENST00000439197 166 ntBASIC6.64□□□□□ -1.35
MSH5O43196 SNORD116-26-201ENST00000516006 96 ntBASIC6.64□□□□□ -1.35
MSH5O43196 RNU6-991P-201ENST00000516168 107 ntBASIC6.64□□□□□ -1.35
MSH5O43196 RNU6-542P-201ENST00000516405 103 ntBASIC6.64□□□□□ -1.35
MSH5O43196 AC103810.1-201ENST00000579873 453 ntBASIC6.64□□□□□ -1.35
MSH5O43196 MIR3938-201ENST00000582157 103 ntBASIC6.64□□□□□ -1.35
MSH5O43196 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
MSH5O43196 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSH5O43196 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.64□□□□□ -1.35
MSH5O43196 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
MSH5O43196 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH5O43196 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms