Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC009237.7-201ENST00000447357 229 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 PCNPP5-201ENST00000452246 481 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RN7SL499P-201ENST00000481141 276 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RN7SL636P-201ENST00000497504 294 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-1143P-201ENST00000516125 104 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 MIR3117-201ENST00000584034 78 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 MTND5P35-201ENST00000557537 1720 ntBASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
PCDHA1Q9Y5I3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.47-201ENST00000362697 108 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.439-201ENST00000384119 94 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-463P-201ENST00000384340 107 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.574-201ENST00000384766 95 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 MIR568-201ENST00000385036 95 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 ELOCP20-201ENST00000422460 345 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 Z96811.1-201ENST00000445880 108 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AC091179.3-201ENST00000474761 144 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 TRBV12-1-201ENST00000479785 344 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AC074133.1-201ENST00000515696 183 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-635P-201ENST00000516651 102 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 SNORD53-201ENST00000579969 78 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 MIR3945-201ENST00000581853 98 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 MIR5006-201ENST00000583027 110 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 MZT1P2-201ENST00000604387 248 ntBASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
PCDHA1Q9Y5I3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 Y_RNA.144-201ENST00000363521 113 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 RNU6-770P-201ENST00000363929 105 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AC004866.1-201ENST00000411748 78 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AL445687.1-201ENST00000439946 251 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AL731563.1-201ENST00000442202 214 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 RPL26P26-201ENST00000480251 434 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 SNORA48.11-201ENST00000517015 89 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AC233702.2-202ENST00000562547 291 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 AL449363.1-201ENST00000617815 186 ntBASIC2.79□□□□□ -1.96
PCDHA1Q9Y5I3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 RNU2-63P-201ENST00000410792 194 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 RPL19P1-201ENST00000411635 428 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 RPS23P5-201ENST00000495419 428 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC234781.5-201ENST00000508429 271 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC026436.1-201ENST00000510537 270 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 SNORA40.15-201ENST00000516884 107 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC021269.2-201ENST00000532318 330 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC046143.2-201ENST00000609789 160 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 7SK.10-201ENST00000621414 298 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 AC064859.1-201ENST00000624741 174 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.78□□□□□ -1.96
PCDHA1Q9Y5I3 SNORD56.5-201ENST00000364281 72 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 RNU6-926P-201ENST00000384075 107 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AL079342.1-201ENST00000401460 267 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AC092427.1-202ENST00000430569 476 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 IFNA11P-201ENST00000446352 526 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 CKS1BP2-201ENST00000497342 240 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AC025465.3-201ENST00000510570 311 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 SNORA40.9-201ENST00000515895 93 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 RNU6-397P-201ENST00000516226 104 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AC090616.3-201ENST00000582184 217 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 SNORD11B-201ENST00000607707 90 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AL357075.2-201ENST00000614906 189 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 AC130454.1-201ENST00000622948 401 ntBASIC2.77□□□□□ -1.97
PCDHA1Q9Y5I3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 SNORD63-201ENST00000384262 68 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 Y_RNA.462-201ENST00000384268 102 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 SNORA67.2-201ENST00000384300 149 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 RNU6-196P-201ENST00000384315 107 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 RNA5SP492-201ENST00000411330 114 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 OOSP1P1-201ENST00000423265 274 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 DYNLT3P2-201ENST00000442517 295 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 RNA5SP24-201ENST00000516478 95 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 RNU6-1098P-201ENST00000516772 96 ntBASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.76□□□□□ -1.97
PCDHA1Q9Y5I3 AC023824.2-201ENST00000566185 400 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms