Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.812-201ENST00000610788 101 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.784-201ENST00000613803 101 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.787-201ENST00000616522 101 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.780-201ENST00000617336 101 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.801-201ENST00000619005 101 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AC130454.1-201ENST00000622948 401 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP289-201ENST00000362332 137 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.28-201ENST00000362554 111 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP99-201ENST00000364020 114 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 SNORA3A-201ENST00000364113 130 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-318P-201ENST00000384283 103 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNY3P4-201ENST00000384428 101 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-160P-201ENST00000384591 107 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 PMCHL1-202ENST00000423102 261 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 AL603825.1-201ENST00000438481 80 ntBASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC9Q9Y3X0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 AC008264.2-201ENST00000610193 3731 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 SNORD87-201ENST00000364849 89 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-1145P-201ENST00000384246 107 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-482P-201ENST00000391068 107 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 AL356057.3-201ENST00000402607 340 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 SNORA40.14-201ENST00000516543 86 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 MIR3171-201ENST00000584270 74 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 AL162730.1-201ENST00000605734 292 ntBASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.526-201ENST00000384572 110 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 SNORD12B-201ENST00000410433 91 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 AC139712.2-201ENST00000424302 339 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-475P-201ENST00000516073 104 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.711-201ENST00000516993 102 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 MIR5188-201ENST00000583467 113 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 AC073476.4-201ENST00000628409 72 ntBASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC9Q9Y3X0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 LINC02555-201ENST00000563933 1951 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 AC005592.1-201ENST00000566527 1640 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.27-201ENST00000362540 103 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RNA5SP393-201ENST00000363423 117 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 SNORA67.1-201ENST00000364749 141 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 SNORA67.2-201ENST00000384300 149 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 SNORD78.2-201ENST00000391076 69 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RNA5SP425-201ENST00000410336 112 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RNU4-53P-201ENST00000410828 140 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 PCNPP5-201ENST00000452246 481 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 AL163540.1-201ENST00000485382 386 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-948P-201ENST00000516374 107 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-107P-201ENST00000516643 102 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 AC020661.2-201ENST00000560114 134 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 MIR4648-201ENST00000580107 72 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 RPS29P30-201ENST00000600975 111 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 SNORD58B-201ENST00000607313 66 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 AC245884.12-201ENST00000615364 59 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 CTSLP2-204ENST00000629029 392 ntBASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CCDC9Q9Y3X0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 U3.8-201ENST00000363675 217 ntBASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.326-201ENST00000365176 113 ntBASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 RNA5SP504-201ENST00000410676 117 ntBASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 RNU2-34P-201ENST00000516534 121 ntBASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.148-201ENST00000363557 117 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.202-201ENST00000364083 110 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-418P-201ENST00000384035 107 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-975P-201ENST00000384296 105 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 RNU7-57P-201ENST00000459540 60 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 AC010531.2-201ENST00000465012 153 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 RN7SL633P-201ENST00000488974 297 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 AC074133.1-201ENST00000515696 183 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 AP003072.1-201ENST00000531740 145 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 MIR4446-201ENST00000578505 67 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms