Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SNORA44.1-201ENST00000517031 108 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC018638.8-201ENST00000588755 281 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 BX248123.2-201ENST00000606318 124 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC084782.3-201ENST00000612282 578 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 AC009248.2-201ENST00000619826 254 ntBASIC1.58□□□□□ -2.16
LHX3Q9UBR4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
LHX3Q9UBR4 RNU6-661P-201ENST00000362409 107 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 RNU6-862P-201ENST00000362804 105 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 RNU6-112P-201ENST00000363599 104 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 RNU6-1059P-201ENST00000363752 98 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.301-201ENST00000364990 103 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 SNORA67.5-201ENST00000391036 107 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 AL445305.1-201ENST00000432577 575 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 HMGB1P18-201ENST00000438801 619 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.57□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.682-201ENST00000516457 100 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 RNU6-1198P-201ENST00000516904 67 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.57□□□□□ -2.16
LHX3Q9UBR4 AF235103.2-201ENST00000525753 346 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 AC080078.2-201ENST00000603766 501 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 AL645939.4-201ENST00000604495 135 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 MIR6128-201ENST00000615528 109 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 ZNF72P-201ENST00000425869 1908 ntBASIC1.57□□□□□ -2.16
LHX3Q9UBR4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
LHX3Q9UBR4 SNORD115-32-201ENST00000364079 82 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 RNU6-1305P-201ENST00000364353 104 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 RNA5SP363-201ENST00000365072 115 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 RNU6-975P-201ENST00000384296 105 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.619-201ENST00000410951 90 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC060773.1-201ENST00000421698 310 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 USP9YP30-201ENST00000430729 455 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC099677.2-201ENST00000436385 175 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 HSPE1P21-201ENST00000438283 308 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC074290.1-201ENST00000448883 135 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC016717.1-201ENST00000448918 286 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC008834.1-201ENST00000511612 175 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 RNU6-1041P-201ENST00000516254 102 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.56□□□□□ -2.16
LHX3Q9UBR4 MIR4790-201ENST00000577799 79 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 MIR3198-2-201ENST00000577868 80 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 MIR4273-201ENST00000582824 84 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AC069114.2-201ENST00000604699 304 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 BNIP3P10-201ENST00000605360 577 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.56□□□□□ -2.16
LHX3Q9UBR4 AL133216.2-202ENST00000634512 349 ntBASIC1.56□□□□□ -2.16
LHX3Q9UBR4 RNU4-13P-201ENST00000364019 141 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNU6-60P-201ENST00000364792 103 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNU6-1235P-201ENST00000384559 107 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.533-201ENST00000384596 114 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 MIR30A-201ENST00000385092 71 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RPL30P16-201ENST00000419341 429 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 AC108667.1-201ENST00000428618 249 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 MTND1P17-201ENST00000448961 204 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 snoU13.30-201ENST00000458951 104 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNU6-498P-201ENST00000459468 107 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNU6-329P-201ENST00000459618 107 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 HMGN2P9-201ENST00000476875 229 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 AC011406.1-201ENST00000512440 370 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNA5SP384-201ENST00000516615 116 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 RNU1-54P-201ENST00000517181 120 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 SNORD53B-201ENST00000577887 78 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.55□□□□□ -2.16
LHX3Q9UBR4 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.55□□□□□ -2.16
LHX3Q9UBR4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 SNORD115-8-201ENST00000363856 82 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RNU1-96P-201ENST00000364163 162 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 SNORD115-38-201ENST00000365037 82 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RNU6-245P-201ENST00000384020 107 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.473-201ENST00000384333 102 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RNU6-296P-201ENST00000384608 107 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 MIR520A-201ENST00000384862 85 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 MIR586-201ENST00000385035 97 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 MIR153-2-201ENST00000385225 87 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RPL31P63-201ENST00000422565 375 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RPL30P10-201ENST00000488148 337 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RNU6-344P-201ENST00000516635 111 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 RNU1-117P-201ENST00000517041 158 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 MTND4LP26-201ENST00000518144 282 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 MIR4742-201ENST00000581069 85 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 7SK.7-201ENST00000603504 247 ntBASIC1.54□□□□□ -2.16
LHX3Q9UBR4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
LHX3Q9UBR4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.53□□□□□ -2.16
LHX3Q9UBR4 Y_RNA.48-201ENST00000362710 103 ntBASIC1.53□□□□□ -2.16
LHX3Q9UBR4 RNU1-42P-201ENST00000364033 160 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms