Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 SCARNA4-201ENST00000629045 128 ntBASIC0.47□□□□□ -2.33
VCX3BQ9H321 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.47□□□□□ -2.33
VCX3BQ9H321 RNU4-76P-201ENST00000364509 141 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU6-517P-201ENST00000384362 110 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU6-482P-201ENST00000391068 107 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 AL034345.1-201ENST00000407768 123 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 BX295541.1-201ENST00000417774 250 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 MTND4P32-201ENST00000437189 1237 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU7-125P-201ENST00000458760 62 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU7-180P-201ENST00000459240 63 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU6-1037P-201ENST00000459571 107 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.46□□□□□ -2.34
VCX3BQ9H321 AL163540.1-201ENST00000485382 386 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 CCDC34P1-201ENST00000507441 517 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 MTND1P22-201ENST00000510572 951 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RNU6-759P-201ENST00000516740 103 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 MRPS36P4-201ENST00000534436 298 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.46□□□□□ -2.34
VCX3BQ9H321 SUB1P2-201ENST00000556401 297 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 AC004584.2-201ENST00000570407 410 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 MIR4778-201ENST00000577635 80 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 AC025449.1-201ENST00000603896 529 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 SNRPGP20-201ENST00000604477 205 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 RMST_3.1-201ENST00000611651 109 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 AC073349.3-201ENST00000617616 186 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 AC068792.1-201ENST00000621354 417 ntBASIC0.46□□□□□ -2.34
VCX3BQ9H321 FGF7P2-201ENST00000332473 296 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU4-21P-201ENST00000362802 126 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU6-1240P-201ENST00000365155 104 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 Y_RNA.327-201ENST00000365201 102 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 MIR653-201ENST00000385279 96 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU6-440P-201ENST00000390882 105 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 MIR450B-201ENST00000401182 78 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 MRPL42P3-201ENST00000401492 326 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 snoU13.23-201ENST00000458863 104 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 U8.21-201ENST00000459536 136 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC005840.1-201ENST00000498412 377 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU6-344P-201ENST00000516635 111 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU6-113P-201ENST00000516653 101 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNA5SP454-201ENST00000517231 127 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC015712.3-201ENST00000559380 164 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 MTATP6P3-201ENST00000581686 676 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 AC087683.2-201ENST00000611384 326 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.45□□□□□ -2.34
VCX3BQ9H321 OR4G1P-203ENST00000641984 1631 ntBASIC0.45□□□□□ -2.34
VCX3BQ9H321 RNU6-199P-201ENST00000362954 107 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 Y_RNA.123-201ENST00000363338 102 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 RNU6-1080P-201ENST00000383982 107 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 SNORA80D-201ENST00000384488 135 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 MIR508-201ENST00000384857 115 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 MIR10B-201ENST00000385011 110 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
VCX3BQ9H321 RNA5SP219-201ENST00000390940 113 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 MIR942-201ENST00000401111 86 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC092473.1-201ENST00000441098 221 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 SNORA14.1-201ENST00000516113 141 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 RNU6-917P-201ENST00000516294 104 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 RNA5SP255-201ENST00000516370 107 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC060788.1-201ENST00000521318 469 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC090049.2-201ENST00000550377 109 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC234772.3-201ENST00000602277 528 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC008536.2-201ENST00000607284 349 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 AC064836.2-201ENST00000609491 462 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 HULC.1-201ENST00000612720 240 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 uc_338.34-201ENST00000617467 174 ntBASIC0.44□□□□□ -2.34
VCX3BQ9H321 AP000568.1-201ENST00000282964 442 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RNU6-1317P-201ENST00000364582 104 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RNU4-12P-201ENST00000365233 139 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 AL355796.1-201ENST00000406706 323 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RNU6-1186P-201ENST00000410429 97 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 MTATP6P18-201ENST00000417994 673 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.43□□□□□ -2.34
VCX3BQ9H321 RN7SL429P-201ENST00000479090 223 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RN7SL489P-201ENST00000486185 223 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RN7SL327P-201ENST00000488659 223 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RNU1-117P-201ENST00000517041 158 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 AC104576.1-201ENST00000524225 88 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
VCX3BQ9H321 AC004812.1-201ENST00000540773 146 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.43□□□□□ -2.34
VCX3BQ9H321 SCOCP1-201ENST00000554676 349 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 FGF7P1-201ENST00000582820 288 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 RN7SL853P-201ENST00000617250 223 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.43□□□□□ -2.34
VCX3BQ9H321 AC068787.1-201ENST00000623908 691 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms