Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 DNAJC19P9-201ENST00000555084 351 ntBASIC6.84□□□□□ -1.31
MSH5O43196 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSH5O43196 AP001273.1-201ENST00000624493 3152 ntBASIC6.84□□□□□ -1.31
MSH5O43196 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
MSH5O43196 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.84□□□□□ -1.32
MSH5O43196 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
MSH5O43196 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSH5O43196 OR14L1P-202ENST00000641545 3009 ntBASIC6.83□□□□□ -1.32
MSH5O43196 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.32
MSH5O43196 MIR1267-201ENST00000408723 78 ntBASIC6.83□□□□□ -1.32
MSH5O43196 RNU6-1086P-201ENST00000410930 100 ntBASIC6.83□□□□□ -1.32
MSH5O43196 TMEM183AP1-205ENST00000432739 290 ntBASIC6.83□□□□□ -1.32
MSH5O43196 AC008033.2-201ENST00000542626 177 ntBASIC6.83□□□□□ -1.32
MSH5O43196 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.83□□□□□ -1.32
MSH5O43196 MIR4791-201ENST00000607666 84 ntBASIC6.83□□□□□ -1.32
MSH5O43196 AC022149.2-201ENST00000621061 203 ntBASIC6.83□□□□□ -1.32
MSH5O43196 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.83□□□□□ -1.32
MSH5O43196 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC6.83□□□□□ -1.32
MSH5O43196 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSH5O43196 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.83□□□□□ -1.32
MSH5O43196 AL161722.3-201ENST00000605789 2983 ntBASIC6.83□□□□□ -1.32
MSH5O43196 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.83□□□□□ -1.32
MSH5O43196 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
MSH5O43196 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSH5O43196 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
MSH5O43196 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
MSH5O43196 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSH5O43196 RNU6-335P-201ENST00000364563 113 ntBASIC6.82□□□□□ -1.32
MSH5O43196 SNORA72.6-201ENST00000384520 129 ntBASIC6.82□□□□□ -1.32
MSH5O43196 PTMAP2-201ENST00000397627 327 ntBASIC6.82□□□□□ -1.32
MSH5O43196 AL139247.1-201ENST00000422768 325 ntBASIC6.82□□□□□ -1.32
MSH5O43196 AC007161.1-204ENST00000423039 460 ntBASIC6.82□□□□□ -1.32
MSH5O43196 AC245047.7-201ENST00000440265 293 ntBASIC6.82□□□□□ -1.32
MSH5O43196 AC005908.1-201ENST00000468701 347 ntBASIC6.82□□□□□ -1.32
MSH5O43196 RNA5SP373-201ENST00000517271 95 ntBASIC6.82□□□□□ -1.32
MSH5O43196 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSH5O43196 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
MSH5O43196 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSH5O43196 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSH5O43196 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.82□□□□□ -1.32
MSH5O43196 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.81□□□□□ -1.32
MSH5O43196 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 HSBP1P2-201ENST00000299671 229 ntBASIC6.81□□□□□ -1.32
MSH5O43196 SNORA25.5-201ENST00000363782 126 ntBASIC6.81□□□□□ -1.32
MSH5O43196 AC104333.2-201ENST00000422630 192 ntBASIC6.81□□□□□ -1.32
MSH5O43196 RNU7-137P-201ENST00000516788 62 ntBASIC6.81□□□□□ -1.32
MSH5O43196 RNU6-958P-201ENST00000516995 106 ntBASIC6.81□□□□□ -1.32
MSH5O43196 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC6.81□□□□□ -1.32
MSH5O43196 RN7SL435P-201ENST00000584418 282 ntBASIC6.81□□□□□ -1.32
MSH5O43196 uc_338.25-201ENST00000613756 156 ntBASIC6.81□□□□□ -1.32
MSH5O43196 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.81□□□□□ -1.32
MSH5O43196 AC006065.5-201ENST00000623427 349 ntBASIC6.81□□□□□ -1.32
MSH5O43196 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
MSH5O43196 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSH5O43196 MFSD8-216ENST00000641147 4009 ntBASIC6.8□□□□□ -1.32
MSH5O43196 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSH5O43196 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSH5O43196 SNORD114-10-201ENST00000363409 72 ntBASIC6.8□□□□□ -1.32
MSH5O43196 MIR23A-201ENST00000385245 73 ntBASIC6.8□□□□□ -1.32
MSH5O43196 AC244505.4-201ENST00000434905 287 ntBASIC6.8□□□□□ -1.32
MSH5O43196 SSXP5-201ENST00000443473 287 ntBASIC6.8□□□□□ -1.32
MSH5O43196 AC006349.1-201ENST00000555526 235 ntBASIC6.8□□□□□ -1.32
MSH5O43196 PARP1P2-201ENST00000556806 195 ntBASIC6.8□□□□□ -1.32
MSH5O43196 MIR7703-201ENST00000620784 77 ntBASIC6.8□□□□□ -1.32
MSH5O43196 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
MSH5O43196 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC6.8□□□□□ -1.32
MSH5O43196 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.8□□□□□ -1.32
MSH5O43196 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.8□□□□□ -1.32
MSH5O43196 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSH5O43196 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSH5O43196 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
MSH5O43196 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSH5O43196 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSH5O43196 MIR340-201ENST00000362125 95 ntBASIC6.79□□□□□ -1.32
MSH5O43196 MIR548U-201ENST00000390728 81 ntBASIC6.79□□□□□ -1.32
MSH5O43196 MIR1254-2-201ENST00000579553 63 ntBASIC6.79□□□□□ -1.32
MSH5O43196 AL160290.3-201ENST00000604869 165 ntBASIC6.79□□□□□ -1.32
MSH5O43196 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC6.79□□□□□ -1.32
MSH5O43196 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSH5O43196 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSH5O43196 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH5O43196 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.78□□□□□ -1.32
MSH5O43196 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH5O43196 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
MSH5O43196 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSH5O43196 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC6.78□□□□□ -1.32
MSH5O43196 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC6.78□□□□□ -1.32
MSH5O43196 AC073264.2-201ENST00000448886 166 ntBASIC6.78□□□□□ -1.32
MSH5O43196 RNU4ATAC9P-201ENST00000517146 126 ntBASIC6.78□□□□□ -1.32
MSH5O43196 AC074140.1-201ENST00000621617 208 ntBASIC6.78□□□□□ -1.32
MSH5O43196 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.78□□□□□ -1.32
MSH5O43196 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.78□□□□□ -1.32
MSH5O43196 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH5O43196 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSH5O43196 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 153.8 ms