Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 DBIP2-201ENST00000419076 262 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 RNU7-170P-201ENST00000459303 61 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 RN7SKP18-201ENST00000516005 275 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 RNU6-453P-201ENST00000516819 85 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AC027176.1-201ENST00000560204 514 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 MIR4738-201ENST00000579134 87 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.802-201ENST00000614892 130 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AL391261.4-201ENST00000616012 481 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AP003355.3-201ENST00000623465 114 ntBASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.310-201ENST00000365063 113 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.420-201ENST00000384043 110 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 SNORA5A-201ENST00000384111 134 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 SNORA67.2-201ENST00000384300 149 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 MIR616-201ENST00000385293 97 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC245291.1-201ENST00000419501 328 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AL714022.1-201ENST00000439897 151 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 RNU7-197P-201ENST00000458836 62 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 snoU13.28-201ENST00000459235 104 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 RNU2-27P-201ENST00000516185 142 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 RNU1-95P-201ENST00000516357 160 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 RNU1-128P-201ENST00000516704 160 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 RNU1-117P-201ENST00000517041 158 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC006130.2-201ENST00000586202 326 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AL391813.1-201ENST00000603098 260 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC099778.2-201ENST00000610904 211 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AL391903.3-201ENST00000612158 163 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC006133.1-201ENST00000617106 264 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 U4.6-201ENST00000621618 127 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC008873.1-201ENST00000625051 138 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 AC068647.1-201ENST00000489539 2265 ntBASIC3.68□□□□□ -1.82
AP4E1Q9UPM8 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.24-201ENST00000362508 103 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AL359837.1-201ENST00000381357 287 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 SNORA18.2-201ENST00000383865 132 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RNU6-44P-201ENST00000384045 107 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 MIR526A2-201ENST00000390198 65 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RNU6-855P-201ENST00000410395 104 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AL035461.1-201ENST00000421490 332 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 SNORD105B-201ENST00000458770 79 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RN7SL542P-201ENST00000467147 294 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RN7SL594P-201ENST00000470590 287 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AC104619.4-201ENST00000510773 249 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RNU1-61P-201ENST00000516107 151 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 RNU6-1007P-201ENST00000516586 107 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 MIR5006-201ENST00000583027 110 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 AC012493.2-201ENST00000595083 291 ntBASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
AP4E1Q9UPM8 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 U3.9-201ENST00000363823 204 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.337-201ENST00000365312 102 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 RNU6-969P-201ENST00000383900 105 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 Y_RNA.456-201ENST00000384232 111 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AL133547.1-201ENST00000448546 220 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AC091179.1-201ENST00000461606 579 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AC145146.1-201ENST00000496370 254 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 RNU6-919P-201ENST00000516731 104 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 RNU6-1234P-201ENST00000516877 103 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AC026333.2-201ENST00000542164 106 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 U7.8-201ENST00000619968 63 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AC022149.2-201ENST00000621061 203 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 AC039056.2-201ENST00000622261 511 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 U6.115-201ENST00000636045 103 ntBASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.66□□□□□ -1.82
AP4E1Q9UPM8 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.65□□□□□ -1.82
AP4E1Q9UPM8 SNORA48.5-201ENST00000391143 135 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 RNU2-49P-201ENST00000410666 184 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 RPL23AP58-201ENST00000440453 469 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AC245047.8-201ENST00000456455 284 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 RNU7-141P-201ENST00000459304 62 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AC023632.4-201ENST00000517783 191 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AC112693.2-201ENST00000556538 232 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AL359881.1-201ENST00000602916 267 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 CR392039.5-201ENST00000623201 510 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AC012640.5-201ENST00000623897 319 ntBASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
AP4E1Q9UPM8 AC007496.3-201ENST00000624987 3443 ntBASIC3.64□□□□□ -1.83
AP4E1Q9UPM8 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms