Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 AC011604.1-201ENST00000545978 196 ntBASIC4.13□□□□□ -1.75
FOXC1Q12948 MIR3163-201ENST00000581592 73 ntBASIC4.13□□□□□ -1.75
FOXC1Q12948 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXC1Q12948 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXC1Q12948 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXC1Q12948 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXC1Q12948 AC107068.1-201ENST00000563286 4218 ntBASIC4.13□□□□□ -1.75
FOXC1Q12948 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXC1Q12948 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXC1Q12948 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXC1Q12948 FAM35CP-201ENST00000554755 2470 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 Y_RNA.10-201ENST00000362371 110 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 RNU6-944P-201ENST00000364023 107 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 SNORD115-35-201ENST00000365122 82 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 RNU6-690P-201ENST00000365242 106 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 RNU6-975P-201ENST00000384296 105 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 MIR300-201ENST00000401138 83 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 RPL30P4-201ENST00000429309 333 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 SNORD19.2-201ENST00000516978 73 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 RNU6-1073P-201ENST00000517182 106 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 AC021443.1-201ENST00000604478 211 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 FAM27D1-201ENST00000612308 341 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 AL161912.2-201ENST00000565707 3007 ntBASIC4.12□□□□□ -1.75
FOXC1Q12948 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXC1Q12948 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
FOXC1Q12948 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 AC004817.4-201ENST00000602396 3625 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
FOXC1Q12948 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 RNU6-170P-201ENST00000362832 104 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 RNU6-655P-201ENST00000362858 107 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 RNA5SP175-201ENST00000364275 119 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 SNORD116-22-201ENST00000384430 92 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 RNU6-938P-201ENST00000411285 103 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 RBMY2UP-201ENST00000453474 324 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 RN7SKP289-201ENST00000517244 295 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXC1Q12948 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXC1Q12948 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXC1Q12948 AC022523.2-201ENST00000561045 150 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 MIR3117-201ENST00000584034 78 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 JPX_2.1-201ENST00000614161 69 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 MIR6891-201ENST00000618788 93 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXC1Q12948 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXC1Q12948 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXC1Q12948 AC087190.4-201ENST00000574616 8334 ntBASIC4.11□□□□□ -1.75
FOXC1Q12948 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXC1Q12948 snoU2_19.1-201ENST00000362361 80 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 MIR218-2-201ENST00000385006 110 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 RN7SKP16-201ENST00000410180 299 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 AC023141.4-201ENST00000412031 328 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 BTF3P4-201ENST00000418852 495 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 AL157831.1-201ENST00000426134 473 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 Y_RNA.666-201ENST00000516187 112 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 RNU6-795P-201ENST00000516323 103 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 RN7SKP282-201ENST00000516824 299 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 RNA5SP230-201ENST00000517039 122 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 AC026403.1-201ENST00000518938 295 ntBASIC4.1□□□□□ -1.75
FOXC1Q12948 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXC1Q12948 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXC1Q12948 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXC1Q12948 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXC1Q12948 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXC1Q12948 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXC1Q12948 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXC1Q12948 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.75
FOXC1Q12948 RNU1-72P-201ENST00000362976 153 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNU1-22P-201ENST00000363334 158 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNA5SP72-201ENST00000364442 117 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 MIR518F-201ENST00000384973 87 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNA5SP296-201ENST00000410523 111 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 SNORA57.3-201ENST00000411095 141 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 492.3 ms