Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.26□□□□□ -2.21
SHANK1Q9Y566 HMGN2P18-201ENST00000450680 270 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 SNORA40.12-201ENST00000516329 111 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 RNU2-44P-201ENST00000516795 194 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 RNU6-835P-201ENST00000516974 104 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 SNORA31.24-201ENST00000517232 57 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SHANK1Q9Y566 SNORA59B-202ENST00000578183 701 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 AC005520.5-201ENST00000613926 164 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 MIR7974-201ENST00000615835 79 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 AC098679.4-201ENST00000624241 654 ntBASIC1.26□□□□□ -2.21
SHANK1Q9Y566 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
SHANK1Q9Y566 U3.13-201ENST00000364804 214 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-827P-201ENST00000365553 106 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU1-52P-201ENST00000384190 164 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-45P-201ENST00000384471 107 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AL591034.2-201ENST00000402839 359 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 SNORD23.1-201ENST00000408212 104 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MIR548J-201ENST00000408833 112 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MTND1P2-201ENST00000430604 821 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AL161651.1-201ENST00000440882 223 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RPS29P29-201ENST00000456396 171 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC087884.1-201ENST00000469738 328 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RPS29P25-201ENST00000481709 171 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RPL30P1-201ENST00000488676 339 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MTCO1P29-201ENST00000496868 288 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNA5SP503-201ENST00000517047 117 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MIR151B-201ENST00000584249 96 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AL357078.3-201ENST00000607528 618 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MIR3662-201ENST00000637030 95 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC080100.1-201ENST00000624239 5356 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 Y_RNA.3-201ENST00000362331 103 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-655P-201ENST00000362858 107 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-527P-201ENST00000363425 104 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 Y_RNA.251-201ENST00000364551 99 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 SRRM1P2-201ENST00000464531 1192 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RPPH1-2P-201ENST00000516688 293 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-323P-201ENST00000521915 107 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC018630.3-201ENST00000542637 96 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC025678.1-201ENST00000567861 338 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 CPDP1-201ENST00000579660 283 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 MIR3660-201ENST00000584845 100 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AL356157.2-201ENST00000605122 111 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC064836.2-201ENST00000609491 462 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 TCL6_2.1-201ENST00000615162 119 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 AC012640.5-201ENST00000623897 319 ntBASIC1.25□□□□□ -2.21
SHANK1Q9Y566 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHANK1Q9Y566 RNU6-451P-201ENST00000362921 107 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-254P-201ENST00000363377 107 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-438P-201ENST00000365561 103 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-245P-201ENST00000384020 107 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-38P-201ENST00000384085 107 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 Y_RNA.505-201ENST00000384489 102 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 CBX3P9-201ENST00000402326 552 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RN7SKP61-201ENST00000410642 295 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 IPO7P1-201ENST00000442031 636 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 SNORD5.1-201ENST00000458800 75 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AP001324.2-201ENST00000461163 319 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RPS29P27-201ENST00000463711 170 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC130509.1-201ENST00000464158 433 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RPS29P1-201ENST00000465274 159 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC006512.1-201ENST00000468816 291 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-864P-201ENST00000516256 108 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RN7SKP49-201ENST00000516675 260 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 TPRKBP2-201ENST00000565969 475 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 LINC02555-201ENST00000563933 1951 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 Y_RNA.6-201ENST00000362350 114 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-227P-201ENST00000362865 103 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 SNORD114-19-201ENST00000363072 75 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-541P-201ENST00000384709 110 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 SNORA12-201ENST00000391162 147 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC009161.1-201ENST00000417306 376 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AL590556.1-201ENST00000423231 483 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms