Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 PCGEM1.1-201ENST00000613431 131 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 AP001282.2-201ENST00000616149 309 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 U6.104-201ENST00000637979 90 ntBASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PCIF1Q9H4Z3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 snoU2_19.1-201ENST00000362361 80 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.14-201ENST00000362415 103 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-379P-201ENST00000363813 104 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 MIR128-1-201ENST00000384921 82 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 SNORA46.1-201ENST00000391069 153 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC097463.2-201ENST00000421074 142 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 EIF4EP4-201ENST00000424916 578 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC005002.2-201ENST00000438228 269 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 RPS3P1-201ENST00000456781 192 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC145146.1-201ENST00000496370 254 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 MTND1P19-201ENST00000511780 315 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 SNORA40.9-201ENST00000515895 93 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 MIR4765-201ENST00000585007 77 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC010999.1-201ENST00000611856 324 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AP003122.5-201ENST00000527668 3766 ntBASIC3.24□□□□□ -1.89
PCIF1Q9H4Z3 AC093831.2-201ENST00000624393 3427 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-961P-201ENST00000363893 105 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RNA5SP139-201ENST00000364340 117 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.350-201ENST00000365409 98 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-1083P-201ENST00000384022 107 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-102P-201ENST00000384485 104 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.562-201ENST00000384695 113 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 SNORA48.5-201ENST00000391143 135 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RPL27AP5-201ENST00000469428 449 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 DEFB131C-201ENST00000528817 165 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 MIR4325-201ENST00000583049 90 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AL356575.1-201ENST00000603008 283 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 MZT1P2-201ENST00000604387 248 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 AC093010.3-201ENST00000570269 15214 ntBASIC3.23□□□□□ -1.89
PCIF1Q9H4Z3 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 RNU6-245P-201ENST00000384020 107 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.581-201ENST00000391017 97 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 Y_RNA.602-201ENST00000410535 92 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC096920.1-201ENST00000423991 241 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC091179.3-201ENST00000474761 144 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 RPL31P41-201ENST00000477967 372 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC022080.3-201ENST00000544433 482 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 AC103810.1-201ENST00000579873 453 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 SDR42E1P4-201ENST00000620894 481 ntBASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PCIF1Q9H4Z3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 SNORD113-8-201ENST00000363497 74 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-1027P-201ENST00000383998 107 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.541-201ENST00000384640 113 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 SNORA12-201ENST00000391162 147 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-1328P-201ENST00000410938 106 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AC004866.1-201ENST00000411748 78 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AC007395.1-201ENST00000451333 677 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RPS29P2-201ENST00000479278 136 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 SCGB1D5P-201ENST00000515134 247 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RNA5SP112-201ENST00000515937 99 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RN7SKP43-201ENST00000516173 320 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.683-201ENST00000516508 93 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-388P-201ENST00000517012 105 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-389P-201ENST00000517048 105 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AC026241.1-201ENST00000517873 2142 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 RRN3P3-201ENST00000549207 578 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 EIF4A1P12-201ENST00000551910 141 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 MIR3128-201ENST00000581957 66 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AC012433.1-201ENST00000588916 398 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AC008739.2-201ENST00000597006 317 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 MTND5P35-201ENST00000557537 1720 ntBASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.21□□□□□ -1.9
PCIF1Q9H4Z3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms