Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 VN1R85P-201ENST00000601587 426 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC091167.4-201ENST00000605079 184 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 AC110774.1-201ENST00000623567 2018 ntBASIC3.06□□□□□ -1.92
CCDC140Q96MF4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC140Q96MF4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 MAPK10-373ENST00000641983 6772 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 IPO8P1-201ENST00000455509 3109 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 SPRR2C-201ENST00000290702 219 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.172-201ENST00000363765 102 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RNU6-407P-201ENST00000365280 104 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RNA5SP240-201ENST00000365355 128 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AL357139.1-201ENST00000407792 426 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RN7SKP202-201ENST00000410439 330 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RNA5SP39-201ENST00000411245 120 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AC009969.1-201ENST00000438726 172 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RNU6-221P-201ENST00000459541 99 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 RPS26P15-201ENST00000488067 348 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AC074050.1-201ENST00000563247 211 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 MIR5692C2-201ENST00000577959 77 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 MIR3117-201ENST00000584034 78 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AC096577.2-201ENST00000611455 153 ntBASIC3.05□□□□□ -1.92
CCDC140Q96MF4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC140Q96MF4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 MIR372-201ENST00000362225 67 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 RNU4-10P-201ENST00000364383 140 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.368-201ENST00000365547 113 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 SNORA48.8-201ENST00000391324 134 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 HSPE1P21-201ENST00000438283 308 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 AC016925.1-201ENST00000458303 298 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 RNU6-991P-201ENST00000516168 107 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 MIR3684-201ENST00000579779 74 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 AC013791.1-201ENST00000616619 62 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 MIR6500-201ENST00000622700 86 ntBASIC3.04□□□□□ -1.92
CCDC140Q96MF4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC140Q96MF4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 RNU6-461P-201ENST00000364195 107 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.310-201ENST00000365063 113 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 SNORA72.4-201ENST00000384174 132 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 Y_RNA.456-201ENST00000384232 111 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AL117339.2-201ENST00000430475 180 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 RPS4XP2-201ENST00000458402 793 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AC008155.2-201ENST00000464337 397 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 RNU6-1219P-201ENST00000516143 112 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC140Q96MF4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MIR95-201ENST00000385072 81 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MIR199A2-201ENST00000385289 110 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 SNORA48.5-201ENST00000391143 135 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 MIR873-201ENST00000401120 77 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 RNU6-628P-201ENST00000410675 107 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC140Q96MF4 RPS20P10-201ENST00000451209 253 ntBASIC3.02□□□□□ -1.93
CCDC140Q96MF4 RNU7-141P-201ENST00000459304 62 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms