Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC012640.5-201ENST00000623897 319 ntBASIC4.48□□□□□ -1.69
SH3RF1Q7Z6J0 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SH3RF1Q7Z6J0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SH3RF1Q7Z6J0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SH3RF1Q7Z6J0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SH3RF1Q7Z6J0 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 IPO8P1-201ENST00000455509 3109 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 RNU1-75P-201ENST00000347264 129 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 RNU6-1164P-201ENST00000364428 107 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 RNU6-19P-201ENST00000384718 107 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 NDUFB4P4-201ENST00000404822 243 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 AL591034.1-201ENST00000407447 340 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 Y_RNA.630-201ENST00000411370 108 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 CYCSP30-201ENST00000546447 172 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 YPEL5P3-201ENST00000547227 352 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 MIR548AY-201ENST00000617669 107 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 AC007656.2-201ENST00000624902 4547 ntBASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SH3RF1Q7Z6J0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.46□□□□□ -1.69
SH3RF1Q7Z6J0 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
SH3RF1Q7Z6J0 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 Y_RNA.111-201ENST00000363248 100 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RNA5SP399-201ENST00000364003 117 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RNU6-294P-201ENST00000364999 102 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RNU6-597P-201ENST00000365620 102 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RNVU1-14-201ENST00000384770 164 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RNA5SP504-201ENST00000410676 117 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 Z92545.1-201ENST00000411782 234 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 AL158147.1-201ENST00000443970 75 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 PPIAP15-201ENST00000479662 484 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 Y_RNA.692-201ENST00000516627 105 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 AC087499.8-201ENST00000578406 226 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 RPS15AP11-201ENST00000594193 385 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 AL031274.2-201ENST00000599419 203 ntBASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SH3RF1Q7Z6J0 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 Y_RNA.361-201ENST00000365515 120 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AP002088.1-201ENST00000382740 395 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 RNU6-905P-201ENST00000384434 107 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 RNU6-748P-201ENST00000384648 107 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 MIR518C-201ENST00000384822 101 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 MIR548A3-201ENST00000385297 97 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AL133475.1-201ENST00000404414 305 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 MIR1251-201ENST00000408552 70 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 Y_RNA.622-201ENST00000411091 108 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AC245047.4-201ENST00000433189 144 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AC117454.1-201ENST00000491120 168 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 RNU2-60P-201ENST00000517290 128 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 RNU6-91P-201ENST00000607774 107 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AC106754.2-201ENST00000623006 233 ntBASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SH3RF1Q7Z6J0 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 AL513302.2-201ENST00000562313 1842 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 USP8P1-201ENST00000494673 3183 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 SNORD114-19-201ENST00000363072 75 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 SNORA36B-201ENST00000410438 131 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 RPS29P4-201ENST00000414733 161 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 RN7SL293P-201ENST00000481765 281 ntBASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.44□□□□□ -1.7
SH3RF1Q7Z6J0 AC133485.4-201ENST00000561835 220 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms