Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNORA43.4-201ENST00000629559 138 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
FOXA1P55317 MTND5P9-201ENST00000503854 1755 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.01□□□□□ -2.25
FOXA1P55317 RNU5A-6P-201ENST00000384136 116 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 SNORA75-201ENST00000384158 137 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 SNORD73A-201ENST00000386062 65 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
FOXA1P55317 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.01□□□□□ -2.25
FOXA1P55317 AC002486.1-201ENST00000435098 391 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 RNU7-14P-201ENST00000459331 62 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 CCDC34P1-201ENST00000507441 517 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.01□□□□□ -2.25
FOXA1P55317 RPL39P5-202ENST00000512505 151 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 RNU5F-4P-201ENST00000516581 114 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.01□□□□□ -2.25
FOXA1P55317 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.01□□□□□ -2.25
FOXA1P55317 AC009994.1-201ENST00000606889 253 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 HULC.1-201ENST00000612720 240 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 MIR8074-201ENST00000615081 81 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 uc_338.34-201ENST00000617467 174 ntBASIC1.01□□□□□ -2.25
FOXA1P55317 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.01□□□□□ -2.25
FOXA1P55317 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
FOXA1P55317 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1□□□□□ -2.25
FOXA1P55317 Y_RNA.122-201ENST00000363331 96 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU6-112P-201ENST00000363599 104 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU6-414P-201ENST00000363705 104 ntBASIC1□□□□□ -2.25
FOXA1P55317 SNORD31B-201ENST00000364977 69 ntBASIC1□□□□□ -2.25
FOXA1P55317 Y_RNA.381-201ENST00000365666 102 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNA5SP219-201ENST00000390940 113 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU6-1158P-201ENST00000391167 107 ntBASIC1□□□□□ -2.25
FOXA1P55317 MIR208B-201ENST00000401172 77 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1□□□□□ -2.25
FOXA1P55317 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1□□□□□ -2.25
FOXA1P55317 MTCO2P19-201ENST00000427513 598 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC073464.1-201ENST00000429823 534 ntBASIC1□□□□□ -2.25
FOXA1P55317 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1□□□□□ -2.25
FOXA1P55317 RPL31P3-201ENST00000458430 332 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU7-138P-201ENST00000459479 64 ntBASIC1□□□□□ -2.25
FOXA1P55317 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1□□□□□ -2.25
FOXA1P55317 AC010493.1-201ENST00000513479 292 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1□□□□□ -2.25
FOXA1P55317 RNU6-567P-201ENST00000516746 107 ntBASIC1□□□□□ -2.25
FOXA1P55317 MTND4P7-201ENST00000523876 130 ntBASIC1□□□□□ -2.25
FOXA1P55317 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1□□□□□ -2.25
FOXA1P55317 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1□□□□□ -2.25
FOXA1P55317 RRN3P3-201ENST00000549207 578 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC090517.1-201ENST00000569307 266 ntBASIC1□□□□□ -2.25
FOXA1P55317 SNORA4-201ENST00000584302 138 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC004223.2-201ENST00000590309 544 ntBASIC1□□□□□ -2.25
FOXA1P55317 MIR6078-201ENST00000611069 100 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC005520.5-201ENST00000613926 164 ntBASIC1□□□□□ -2.25
FOXA1P55317 AL354950.2-201ENST00000617939 290 ntBASIC1□□□□□ -2.25
FOXA1P55317 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1□□□□□ -2.25
FOXA1P55317 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1□□□□□ -2.25
FOXA1P55317 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1□□□□□ -2.25
FOXA1P55317 RNU1-76P-201ENST00000362903 159 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 Y_RNA.191-201ENST00000363972 113 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 RNU6-1103P-201ENST00000384150 107 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 RNU6-296P-201ENST00000384608 107 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 MIR489-201ENST00000384923 84 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
FOXA1P55317 AL606923.1-201ENST00000406616 190 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.99□□□□□ -2.25
FOXA1P55317 RPL21P111-201ENST00000418453 477 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.99□□□□□ -2.25
FOXA1P55317 AL353193.1-201ENST00000421444 268 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC012306.1-201ENST00000423267 114 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 NDUFA5P4-201ENST00000436704 385 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 MTCO2P3-201ENST00000442543 421 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA1P55317 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA1P55317 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.99□□□□□ -2.25
FOXA1P55317 AC245517.4-201ENST00000448601 281 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC016925.1-201ENST00000458303 298 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 RNU6-956P-201ENST00000458868 103 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 snoU13.9-201ENST00000458927 103 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC087477.1-201ENST00000465747 340 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AL163973.1-201ENST00000484753 577 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC025465.3-201ENST00000510570 311 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
FOXA1P55317 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA1P55317 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 SUMO2P18-201ENST00000518873 252 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC007834.2-201ENST00000536310 343 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA1P55317 HMGB1P33-201ENST00000563485 527 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA1P55317 MIR4422-201ENST00000581938 83 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 MIR4452-201ENST00000583004 71 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC073648.5-201ENST00000603502 305 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
FOXA1P55317 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC068205.3-201ENST00000636385 468 ntBASIC0.99□□□□□ -2.25
FOXA1P55317 AC009541.1-201ENST00000438279 2662 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 MIR26B-201ENST00000362251 77 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 RNU1-22P-201ENST00000363334 158 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 SNORD114-22-201ENST00000365423 72 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 RNU6-1026P-201ENST00000384465 108 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 RNU2-7P-201ENST00000410794 178 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms