Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CYP4A27P-201ENST00000567218 190 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 MIR3923-201ENST00000579521 83 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 MIR3136-201ENST00000583498 78 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD3P31249 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD3P31249 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AL357075.2-201ENST00000614906 189 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AC073476.4-201ENST00000628409 72 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXD3P31249 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD3P31249 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
HOXD3P31249 snoU2_19.2-201ENST00000363024 80 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 Y_RNA.307-201ENST00000365022 117 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 SNORA7.4-201ENST00000384249 137 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 SNORD15B-201ENST00000384714 146 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 SNORD78.2-201ENST00000391076 69 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 SNORA12-201ENST00000391162 147 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 FO393413.1-201ENST00000402892 195 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD3P31249 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD3P31249 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD3P31249 RN7SL442P-201ENST00000473804 320 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AC103975.1-201ENST00000482506 483 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 RN7SL283P-201ENST00000489055 303 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 Y_RNA.680-201ENST00000516441 93 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 SNORA25.14-201ENST00000516481 132 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD3P31249 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD3P31249 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD3P31249 MIR4765-201ENST00000585007 77 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 MZT1P2-201ENST00000604387 248 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AL138963.2-201ENST00000605137 226 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AL033523.1-201ENST00000605153 153 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AC090425.1-201ENST00000610007 140 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD3P31249 PCGEM1.1-201ENST00000613431 131 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD3P31249 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD3P31249 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
HOXD3P31249 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
HOXD3P31249 AC026241.1-201ENST00000517873 2142 ntBASIC2.41□□□□□ -2.02
HOXD3P31249 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
HOXD3P31249 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
HOXD3P31249 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.4□□□□□ -2.02
HOXD3P31249 RNU6-655P-201ENST00000362858 107 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-1210P-201ENST00000363775 107 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 SNORD115-8-201ENST00000363856 82 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-961P-201ENST00000363893 105 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-1180P-201ENST00000364935 107 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 SNORD115-38-201ENST00000365037 82 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-1145P-201ENST00000384246 107 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 MIR1302-6-201ENST00000408466 90 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNA5SP201-201ENST00000410316 124 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 EIF4EP4-201ENST00000424916 578 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD3P31249 RPL31P41-201ENST00000477967 372 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AC145146.1-201ENST00000496370 254 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AC025465.3-201ENST00000510570 311 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-408P-201ENST00000515910 100 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU6-1271P-201ENST00000517049 105 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD3P31249 RRN3P3-201ENST00000549207 578 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 MIR4300-201ENST00000581016 96 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AC093732.2-201ENST00000607950 274 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AC062037.2-201ENST00000610137 73 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 AC010615.1-201ENST00000594254 1764 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
HOXD3P31249 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
HOXD3P31249 AL359854.1-201ENST00000614203 1594 ntBASIC2.4□□□□□ -2.03
HOXD3P31249 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 OR56A5-201ENST00000340110 738 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 Y_RNA.84-201ENST00000363011 104 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU6-137P-201ENST00000363680 108 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 Y_RNA.188-201ENST00000363952 111 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 SNORD56.5-201ENST00000364281 72 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU4-56P-201ENST00000364700 142 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 SNORD115-46-201ENST00000390982 71 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU2-38P-201ENST00000410856 79 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RPS26P42-201ENST00000413485 326 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RPL32P35-201ENST00000415214 394 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD3P31249 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 SNORD127-201ENST00000458892 86 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 AC007215.1-201ENST00000464893 276 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNA5SP217-201ENST00000515959 91 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU6-1143P-201ENST00000516125 104 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RN7SKP49-201ENST00000516675 260 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU6-567P-201ENST00000516746 107 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 RNU6-1198P-201ENST00000516904 67 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 AC023157.2-201ENST00000540596 141 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms