Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.96□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-137P-201ENST00000363680 108 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 SNORD115-8-201ENST00000363856 82 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 SNORD115-38-201ENST00000365037 82 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 MIR487A-201ENST00000385009 80 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 SNORA26.7-201ENST00000391288 122 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AC027124.2-201ENST00000428249 105 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AC099799.1-201ENST00000439809 192 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AL513328.1-201ENST00000446460 224 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 MIR449C-201ENST00000516047 92 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 RNU7-4P-201ENST00000516961 62 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-58P-201ENST00000517143 103 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 AC090971.5-201ENST00000621102 293 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 ZNF204P-201ENST00000416749 2397 ntBASIC3.96□□□□□ -1.78
CCDC9Q9Y3X0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 U8.2-201ENST00000363156 134 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 SNORA25B-201ENST00000365507 128 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-851P-201ENST00000384565 107 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 MIR559-201ENST00000385188 96 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-1156P-201ENST00000410365 100 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 USP9YP16-201ENST00000430287 407 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 USP9YP23-201ENST00000455085 407 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 RNU5F-4P-201ENST00000516581 114 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 AC027288.2-201ENST00000553028 243 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 AC005034.5-201ENST00000604219 466 ntBASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC9Q9Y3X0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 SNORA18.2-201ENST00000383865 132 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 AL035666.1-201ENST00000446195 348 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 AL118496.2-201ENST00000448300 230 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-976P-201ENST00000516086 111 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-699P-201ENST00000517081 110 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-667P-201ENST00000517186 102 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 ANP32BP3-201ENST00000559213 706 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 PWAR6-201ENST00000552334 4618 ntBASIC3.94□□□□□ -1.78
CCDC9Q9Y3X0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 BX322639.1-202ENST00000423987 2213 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.106-201ENST00000363189 100 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 RNU5F-3P-201ENST00000363767 117 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-234P-201ENST00000365229 104 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.364-201ENST00000365532 101 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AP002088.1-201ENST00000382740 395 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.428-201ENST00000384078 102 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 BMS1P22-201ENST00000414726 313 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AP000870.1-201ENST00000472927 406 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AC107032.1-201ENST00000485945 480 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 AC064859.1-201ENST00000624741 174 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.93□□□□□ -1.78
CCDC9Q9Y3X0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-743P-201ENST00000364151 106 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 RNU1-91P-201ENST00000364746 163 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.314-201ENST00000365114 102 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.463-201ENST00000384271 102 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 MIR184-201ENST00000384962 84 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 MIR549A-201ENST00000385268 96 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 AC105758.1-201ENST00000506038 399 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.661-201ENST00000516003 99 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 RNA5SP24-201ENST00000516478 95 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 AC107016.2-201ENST00000547968 190 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 SNORD53-201ENST00000579969 78 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 TCL6_2.1-201ENST00000615162 119 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 MTND5P16-201ENST00000460269 1703 ntBASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC9Q9Y3X0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-1115P-201ENST00000362490 106 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 Y_RNA.197-201ENST00000364004 102 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-280P-201ENST00000364145 104 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AL357139.1-201ENST00000407792 426 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC018868.1-201ENST00000491307 315 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms