Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL17A1Q9UMD9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL17A1Q9UMD9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL17A1Q9UMD9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL17A1Q9UMD9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL17A1Q9UMD9 Y_RNA.4-201ENST00000362333 112 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 Y_RNA.412-201ENST00000384001 104 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 MIR9-1-201ENST00000385198 89 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 5S_rRNA.2-201ENST00000391293 112 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 CST9LP2-201ENST00000437612 320 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNU7-87P-201ENST00000459343 62 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC091959.1-201ENST00000495857 238 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNA5SP76-201ENST00000516277 87 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNU6-65P-201ENST00000516332 98 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC025755.1-201ENST00000521306 278 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 MIR5696-201ENST00000578474 85 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC004852.3-201ENST00000614131 326 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC073476.4-201ENST00000628409 72 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNA5SP289-201ENST00000362332 137 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNU6-1167P-201ENST00000363227 94 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNU4-11P-201ENST00000365287 132 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 SNORD63-201ENST00000384262 68 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 MIR512-1-201ENST00000384913 84 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 CYCSP33-201ENST00000414485 327 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AL390729.2-201ENST00000416137 156 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AL096701.2-201ENST00000416920 238 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AL356867.1-201ENST00000429623 299 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 U8.22-201ENST00000459141 133 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 HMGB3P3-201ENST00000510526 400 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RNU6-1012P-201ENST00000516606 109 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 DEFB131C-201ENST00000528817 165 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RPL21P9-201ENST00000556149 474 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AC005828.6-201ENST00000606610 232 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 AL353748.2-201ENST00000622148 471 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 ZNF720P1-201ENST00000562403 1939 ntBASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.43□□□□□ -1.7
COL17A1Q9UMD9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AC069528.2-201ENST00000624849 1991 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 UBE2WP1-201ENST00000362030 340 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 MIR412-201ENST00000362142 91 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 Y_RNA.23-201ENST00000362496 106 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 RNU6-512P-201ENST00000364438 103 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 RNU6-514P-201ENST00000384208 107 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 SNORA12.1-201ENST00000390873 148 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 MIR513C-201ENST00000401352 84 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 MIR1290-201ENST00000408735 78 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 Y_RNA.623-201ENST00000411128 95 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 RN7SKP192-201ENST00000411291 327 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 RPS12P18-201ENST00000442381 270 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 HMGN1P18-201ENST00000457642 277 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 RNU7-107P-201ENST00000459121 61 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AL049874.1-201ENST00000489560 388 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 SNORA27.4-201ENST00000516650 95 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AP005660.1-201ENST00000522972 293 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 TRAV37-201ENST00000553906 342 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 SNORD113-5-201ENST00000607261 78 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AC004825.2-201ENST00000616634 455 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 AC007318.2-201ENST00000620999 243 ntBASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.42□□□□□ -1.7
COL17A1Q9UMD9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RPL9P7-201ENST00000330965 580 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RNU1-75P-201ENST00000347264 129 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RNU4-56P-201ENST00000364700 142 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 Y_RNA.420-201ENST00000384043 110 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 MIR3074-201ENST00000384885 81 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 MIR190B-201ENST00000401119 79 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RNU2-2P-201ENST00000410396 191 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AL513043.1-201ENST00000439124 535 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 UQCRBP2-201ENST00000447827 297 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC006539.3-201ENST00000454258 129 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC005840.1-201ENST00000498412 377 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC006445.2-201ENST00000510061 472 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 MTND5P34-201ENST00000568888 325 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 RNU2-4P-201ENST00000606190 192 ntBASIC4.41□□□□□ -1.7
COL17A1Q9UMD9 U2.15-201ENST00000611544 191 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms