Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RPL21P129-201ENST00000491732 478 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC006445.1-201ENST00000491925 405 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RPS27P26-201ENST00000494583 239 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RNA5SP112-201ENST00000515937 99 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 RNU6-570P-201ENST00000517051 105 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 SCARNA11.3-201ENST00000517276 130 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 EIF4A1P12-201ENST00000551910 141 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC233702.2-202ENST00000562547 291 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 MIR4429-201ENST00000580105 73 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC005357.1-201ENST00000588399 301 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 U3.45-201ENST00000607547 219 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC090425.1-201ENST00000610007 140 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.89□□□□□ -1.95
VSX1Q9NZR4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VSX1Q9NZR4 AP003122.5-201ENST00000527668 3766 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.26-201ENST00000362539 101 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 SNORA71.3-201ENST00000362582 128 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RNU6-873P-201ENST00000363833 107 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 CD24P4-201ENST00000382840 243 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RNU6-1310P-201ENST00000384153 107 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RNU6-793P-201ENST00000384233 104 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AL033519.2-201ENST00000403958 392 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AL133475.1-201ENST00000404414 305 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RPL32P35-201ENST00000415214 394 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC008155.2-201ENST00000464337 397 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AL121594.1-201ENST00000475906 575 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 SNORA25.14-201ENST00000516481 132 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC023824.2-201ENST00000566185 400 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC136932.1-201ENST00000574771 208 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 MIR4423-201ENST00000580922 80 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 SDR42E1P4-201ENST00000620894 481 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC099654.7-201ENST00000635788 2127 ntBASIC2.88□□□□□ -1.95
VSX1Q9NZR4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VSX1Q9NZR4 AC069528.2-201ENST00000624849 1991 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 snoU2_19.2-201ENST00000363024 80 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RNU6-486P-201ENST00000363116 107 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.105-201ENST00000363182 111 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RNA5SP50-201ENST00000363731 107 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.352-201ENST00000365439 102 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.416-201ENST00000384014 113 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.515-201ENST00000384535 112 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 SNORA11-201ENST00000408789 128 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RNU6-1001P-201ENST00000411265 100 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RNA5SP492-201ENST00000411330 114 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RPL21P38-201ENST00000418090 167 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC005002.2-201ENST00000438228 269 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC117440.1-201ENST00000474107 571 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 RN7SL293P-201ENST00000481765 281 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 UBL5P4-201ENST00000562584 236 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 MIR4444-1-201ENST00000581696 74 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 MIR4444-2-201ENST00000584390 74 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 MIR4765-201ENST00000585007 77 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 AC037487.3-201ENST00000606668 112 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VSX1Q9NZR4 ZNF204P-201ENST00000416749 2397 ntBASIC2.87□□□□□ -1.95
VSX1Q9NZR4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.86□□□□□ -1.95
VSX1Q9NZR4 MTND5P35-201ENST00000557537 1720 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.86□□□□□ -1.95
VSX1Q9NZR4 Y_RNA.20-201ENST00000362479 113 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RNA5SP361-201ENST00000362686 118 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 SNORD113-8-201ENST00000363497 74 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RNU1-33P-201ENST00000364249 162 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 SNORA18.3-201ENST00000384122 132 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 MIR200C-201ENST00000384980 68 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 MIR670-201ENST00000390142 98 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RNU6-907P-201ENST00000390924 102 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 SNORA53-201ENST00000391141 249 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RPL23AP36-201ENST00000413895 458 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AL358232.1-201ENST00000448030 501 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AC146507.2-201ENST00000460608 476 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AC112771.1-201ENST00000463581 102 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 RPL26P26-201ENST00000480251 434 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.86□□□□□ -1.95
VSX1Q9NZR4 SNORA40.9-201ENST00000515895 93 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 MIR2682-201ENST00000580305 110 ntBASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.86□□□□□ -1.95
VSX1Q9NZR4 AC011373.1-201ENST00000607270 237 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 153 ms