Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD3P31249 AC073410.2-201ENST00000603240 332 ntBASIC2.45□□□□□ -2.02
HOXD3P31249 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD3P31249 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXD3P31249 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
HOXD3P31249 AL109809.4-201ENST00000603520 2185 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXD3P31249 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 RNU4-15P-201ENST00000362613 141 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 DYNLT3P1-201ENST00000378574 347 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 Y_RNA.401-201ENST00000383965 117 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 SNORA44-201ENST00000384584 132 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 MIR186-201ENST00000384988 86 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AL079342.1-201ENST00000401460 267 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 RNU6-1001P-201ENST00000411265 100 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AL513477.1-202ENST00000417061 214 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AL358075.3-201ENST00000426289 226 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 AC010095.1-201ENST00000443543 144 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC006539.3-201ENST00000454258 129 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXD3P31249 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD3P31249 AC146507.2-201ENST00000460608 476 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC010401.1-201ENST00000463867 348 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 RPL23AP70-201ENST00000483361 460 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXD3P31249 RNU6-1114P-201ENST00000516022 107 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 MIR2355-201ENST00000517199 87 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC091144.1-201ENST00000519573 138 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC115990.1-201ENST00000526957 301 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC093023.1-201ENST00000547375 507 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXD3P31249 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 AC136932.1-201ENST00000574771 208 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC130454.1-201ENST00000622948 401 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 AC018692.3-201ENST00000623929 123 ntBASIC2.44□□□□□ -2.02
HOXD3P31249 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.44□□□□□ -2.02
HOXD3P31249 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.44□□□□□ -2.02
HOXD3P31249 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXD3P31249 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD3P31249 AC080100.1-201ENST00000624239 5356 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
HOXD3P31249 ZNF204P-201ENST00000416749 2397 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 RNU1-75P-201ENST00000347264 129 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD3P31249 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
HOXD3P31249 snoU2_19.1-201ENST00000362361 80 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 RNU6-873P-201ENST00000363833 107 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 Y_RNA.183-201ENST00000363882 113 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 Y_RNA.276-201ENST00000364732 109 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 Y_RNA.461-201ENST00000384263 103 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 RNU6-713P-201ENST00000384761 107 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 MIR208B-201ENST00000401172 77 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 CYCSP48-201ENST00000417124 323 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD3P31249 CBX3P6-201ENST00000430257 527 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AC022018.1-201ENST00000430685 241 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 BX679664.1-201ENST00000434429 253 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD3P31249 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD3P31249 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD3P31249 AP003733.2-201ENST00000529409 171 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AC079598.5-201ENST00000547460 117 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXD3P31249 UBL5P2-201ENST00000583788 219 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 AL034555.1-201ENST00000604816 211 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 uc_338.14-201ENST00000613162 166 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXD3P31249 AC137590.2-201ENST00000619709 240 ntBASIC2.43□□□□□ -2.02
HOXD3P31249 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD3P31249 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXD3P31249 Y_RNA.439-201ENST00000384119 94 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 RNU6-937P-201ENST00000384325 106 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 RNU1-57P-201ENST00000384491 166 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 MIR329-1-201ENST00000385028 80 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
HOXD3P31249 AL031121.1-201ENST00000406553 254 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 SNORD12B-201ENST00000410433 91 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 RNU6-1328P-201ENST00000410938 106 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AC097463.2-201ENST00000421074 142 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 SDAD1P3-201ENST00000427380 333 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 UBBP3-201ENST00000445497 241 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXD3P31249 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD3P31249 snoU13.14-201ENST00000459372 104 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AL121594.1-201ENST00000475906 575 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD3P31249 AC008885.1-201ENST00000514930 301 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 Y_RNA.668-201ENST00000516233 93 ntBASIC2.42□□□□□ -2.02
HOXD3P31249 RNU2-53P-201ENST00000516257 147 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms