Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-41P-201ENST00000384741 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 AL603914.1-201ENST00000401964 204 ntBASIC3.97□□□□□ -1.77
MSX1P28360 CRYBB2P1-203ENST00000415709 538 ntBASIC3.97□□□□□ -1.77
MSX1P28360 AC004552.1-201ENST00000419089 348 ntBASIC3.97□□□□□ -1.77
MSX1P28360 MTCO1P44-201ENST00000441935 243 ntBASIC3.97□□□□□ -1.77
MSX1P28360 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 RPS26P3-201ENST00000470205 348 ntBASIC3.97□□□□□ -1.77
MSX1P28360 AC090543.2-201ENST00000483963 348 ntBASIC3.97□□□□□ -1.77
MSX1P28360 AC004057.1-201ENST00000485827 348 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RN7SL604P-201ENST00000492589 296 ntBASIC3.97□□□□□ -1.77
MSX1P28360 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
MSX1P28360 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-1299P-201ENST00000516316 100 ntBASIC3.97□□□□□ -1.77
MSX1P28360 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 AC112484.5-201ENST00000624189 228 ntBASIC3.97□□□□□ -1.77
MSX1P28360 MIR492-201ENST00000638676 116 ntBASIC3.97□□□□□ -1.77
MSX1P28360 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
MSX1P28360 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSX1P28360 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.97□□□□□ -1.77
MSX1P28360 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
MSX1P28360 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
MSX1P28360 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.96□□□□□ -1.78
MSX1P28360 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSX1P28360 AC007256.1-201ENST00000392253 2765 ntBASIC3.96□□□□□ -1.78
MSX1P28360 RNU6-271P-201ENST00000363858 105 ntBASIC3.96□□□□□ -1.78
MSX1P28360 RNU6-880P-201ENST00000384526 107 ntBASIC3.96□□□□□ -1.78
MSX1P28360 MIR147B-201ENST00000390185 80 ntBASIC3.96□□□□□ -1.78
MSX1P28360 HDGFP1-201ENST00000405943 252 ntBASIC3.96□□□□□ -1.78
MSX1P28360 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX1P28360 RPL39P40-201ENST00000445481 146 ntBASIC3.96□□□□□ -1.78
MSX1P28360 AC090515.1-201ENST00000465295 476 ntBASIC3.96□□□□□ -1.78
MSX1P28360 RPL35AP15-201ENST00000468042 339 ntBASIC3.96□□□□□ -1.78
MSX1P28360 RPS26P45-201ENST00000471748 340 ntBASIC3.96□□□□□ -1.78
MSX1P28360 RPS29P24-201ENST00000486345 171 ntBASIC3.96□□□□□ -1.78
MSX1P28360 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX1P28360 Y_RNA.690-201ENST00000516603 95 ntBASIC3.96□□□□□ -1.78
MSX1P28360 AC100770.1-201ENST00000532310 322 ntBASIC3.96□□□□□ -1.78
MSX1P28360 HSPE1P7-201ENST00000604681 321 ntBASIC3.96□□□□□ -1.78
MSX1P28360 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.96□□□□□ -1.78
MSX1P28360 AL021707.8-201ENST00000609428 183 ntBASIC3.96□□□□□ -1.78
MSX1P28360 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX1P28360 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX1P28360 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSX1P28360 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
MSX1P28360 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.95□□□□□ -1.78
MSX1P28360 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
MSX1P28360 snoU2_19.1-201ENST00000362361 80 ntBASIC3.95□□□□□ -1.78
MSX1P28360 SNORA27.1-201ENST00000362604 124 ntBASIC3.95□□□□□ -1.78
MSX1P28360 SNORA51.4-201ENST00000364993 124 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP167-201ENST00000365461 116 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNU1-13P-201ENST00000384499 162 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP317-201ENST00000410176 116 ntBASIC3.95□□□□□ -1.78
MSX1P28360 MIR1911-201ENST00000410783 80 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP311-201ENST00000411290 116 ntBASIC3.95□□□□□ -1.78
MSX1P28360 SNORA84-201ENST00000459229 133 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RPS26P55-201ENST00000471178 356 ntBASIC3.95□□□□□ -1.78
MSX1P28360 AL592156.1-201ENST00000508758 304 ntBASIC3.95□□□□□ -1.78
MSX1P28360 PARP4P3-201ENST00000510265 317 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP315-201ENST00000516340 116 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP312-201ENST00000517068 116 ntBASIC3.95□□□□□ -1.78
MSX1P28360 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.95□□□□□ -1.78
MSX1P28360 AC034105.4-201ENST00000568304 277 ntBASIC3.95□□□□□ -1.78
MSX1P28360 AC091178.2-201ENST00000584401 117 ntBASIC3.95□□□□□ -1.78
MSX1P28360 AC093732.2-201ENST00000607950 274 ntBASIC3.95□□□□□ -1.78
MSX1P28360 AL138880.2-201ENST00000616214 239 ntBASIC3.95□□□□□ -1.78
MSX1P28360 snoZ196.1-201ENST00000625269 89 ntBASIC3.95□□□□□ -1.78
MSX1P28360 RNA5SP196-201ENST00000625967 102 ntBASIC3.95□□□□□ -1.78
MSX1P28360 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
MSX1P28360 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
MSX1P28360 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSX1P28360 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
MSX1P28360 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX1P28360 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX1P28360 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
MSX1P28360 RNU1-15P-201ENST00000353977 144 ntBASIC3.94□□□□□ -1.78
MSX1P28360 MIR450A1-201ENST00000362262 91 ntBASIC3.94□□□□□ -1.78
MSX1P28360 RNU1-57P-201ENST00000384491 166 ntBASIC3.94□□□□□ -1.78
MSX1P28360 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
MSX1P28360 SNORA12-201ENST00000391162 147 ntBASIC3.94□□□□□ -1.78
MSX1P28360 AL135786.1-201ENST00000415892 214 ntBASIC3.94□□□□□ -1.78
MSX1P28360 YME1L1P1-201ENST00000429435 297 ntBASIC3.94□□□□□ -1.78
MSX1P28360 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX1P28360 AL031737.1-201ENST00000450125 223 ntBASIC3.94□□□□□ -1.78
MSX1P28360 ABCF2P2-201ENST00000450549 296 ntBASIC3.94□□□□□ -1.78
MSX1P28360 HMGN2P9-201ENST00000476875 229 ntBASIC3.94□□□□□ -1.78
MSX1P28360 RPL31P61-201ENST00000496160 376 ntBASIC3.94□□□□□ -1.78
MSX1P28360 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.94□□□□□ -1.78
MSX1P28360 RNA5SP73-201ENST00000516744 108 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 189.1 ms