Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.19□□□□□ -2.22
NPHP4O75161 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 RNU6-410P-201ENST00000517006 107 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AP001372.4-201ENST00000524889 472 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AC115990.1-201ENST00000526957 301 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AC023050.3-201ENST00000541142 333 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.19□□□□□ -2.22
NPHP4O75161 SNORA59B-202ENST00000578183 701 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 MIR4711-201ENST00000578274 70 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AC024933.1-201ENST00000608472 348 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 MIR8074-201ENST00000615081 81 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AF246928.1-201ENST00000623768 87 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 AC009541.1-201ENST00000438279 2662 ntBASIC1.19□□□□□ -2.22
NPHP4O75161 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.19□□□□□ -2.22
NPHP4O75161 RNU6-112P-201ENST00000363599 104 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.18□□□□□ -2.22
NPHP4O75161 SNORA40.3-201ENST00000390964 122 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 MTCO3P41-201ENST00000414801 328 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 RPL21P111-201ENST00000418453 477 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AL358176.2-201ENST00000425769 204 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 GPR143P-201ENST00000434155 205 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AC244670.1-201ENST00000436879 112 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.18□□□□□ -2.22
NPHP4O75161 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.18□□□□□ -2.22
NPHP4O75161 RNA5SP395-201ENST00000516567 118 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
NPHP4O75161 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.18□□□□□ -2.22
NPHP4O75161 AC009094.1-201ENST00000564443 426 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AC092354.1-201ENST00000606057 376 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AC136475.10-201ENST00000620253 385 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 AC068205.3-201ENST00000636385 468 ntBASIC1.18□□□□□ -2.22
NPHP4O75161 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
NPHP4O75161 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
NPHP4O75161 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.17□□□□□ -2.22
NPHP4O75161 Z99497.1-201ENST00000421282 135 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC009961.2-201ENST00000435771 251 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.17□□□□□ -2.22
NPHP4O75161 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.17□□□□□ -2.22
NPHP4O75161 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
NPHP4O75161 MTCO2P6-201ENST00000463134 685 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC091874.1-201ENST00000511402 339 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC106038.2-201ENST00000520706 568 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.17□□□□□ -2.22
NPHP4O75161 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.17□□□□□ -2.22
NPHP4O75161 AC103996.1-201ENST00000555468 102 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.17□□□□□ -2.22
NPHP4O75161 AC078795.3-201ENST00000602913 472 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 AC007494.3-201ENST00000624660 743 ntBASIC1.17□□□□□ -2.22
NPHP4O75161 MIR26B-201ENST00000362251 77 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 RNU6-271P-201ENST00000363858 105 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 RNU6-142P-201ENST00000384019 107 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AL031577.2-201ENST00000404133 280 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 HIGD1AP15-201ENST00000416198 280 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 BX295541.1-201ENST00000417774 250 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AC123900.1-201ENST00000420390 96 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AL031274.1-201ENST00000450334 232 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.16□□□□□ -2.22
NPHP4O75161 RNU6-232P-201ENST00000517144 64 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 RRN3P3-201ENST00000549207 578 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AC021231.3-201ENST00000558497 370 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AC005786.1-201ENST00000588553 154 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 AC002044.1-201ENST00000606707 158 ntBASIC1.16□□□□□ -2.22
NPHP4O75161 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
NPHP4O75161 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
NPHP4O75161 RNU6-1141P-201ENST00000364520 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 SNORD32A-201ENST00000364805 84 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-282P-201ENST00000365357 103 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-378P-201ENST00000384324 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-1235P-201ENST00000384559 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-296P-201ENST00000384608 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-297P-201ENST00000384636 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 MIR454-201ENST00000390180 115 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 SNORD70.1-201ENST00000391007 85 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RN7SKP200-201ENST00000410564 320 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RPL30P13-201ENST00000418873 348 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 CYCSP46-201ENST00000423569 204 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 PRPS1P1-201ENST00000445305 876 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 AC079781.2-201ENST00000446424 169 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 snoU13.9-201ENST00000458927 103 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU7-182P-201ENST00000459009 62 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-498P-201ENST00000459468 107 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 AC022447.4-201ENST00000504053 364 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 AC005741.1-201ENST00000511094 432 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-1098P-201ENST00000516772 96 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNA5SP503-201ENST00000517047 117 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 AP003034.1-201ENST00000534621 422 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 Z99289.3-201ENST00000605586 594 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 AC008945.2-201ENST00000606056 604 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.15□□□□□ -2.22
NPHP4O75161 SEPT14P19-203ENST00000633205 211 ntBASIC1.15□□□□□ -2.22
NPHP4O75161 RNU6-553P-201ENST00000364047 96 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 RNU6-827P-201ENST00000365553 106 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 RNU6-438P-201ENST00000365561 103 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 SNORA36A-201ENST00000384221 132 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 MIR508-201ENST00000384857 115 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 MTND3P17-201ENST00000416968 344 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.15□□□□□ -2.23
NPHP4O75161 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.15□□□□□ -2.23
NPHP4O75161 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms