Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU5B-3P-201ENST00000516601 115 ntBASIC2.53□□□□□ -2
LDB3O75112 RNU7-4P-201ENST00000516961 62 ntBASIC2.53□□□□□ -2
LDB3O75112 SNORA31.18-201ENST00000517043 134 ntBASIC2.53□□□□□ -2
LDB3O75112 RNU6-570P-201ENST00000517051 105 ntBASIC2.53□□□□□ -2
LDB3O75112 SNORA31.26-201ENST00000517250 137 ntBASIC2.53□□□□□ -2
LDB3O75112 HSPE1P20-201ENST00000538133 289 ntBASIC2.53□□□□□ -2
LDB3O75112 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.53□□□□□ -2
LDB3O75112 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.53□□□□□ -2
LDB3O75112 AC060766.3-201ENST00000591442 263 ntBASIC2.53□□□□□ -2
LDB3O75112 SCARNA17.4-201ENST00000614296 143 ntBASIC2.53□□□□□ -2
LDB3O75112 AC024581.2-201ENST00000619986 252 ntBASIC2.53□□□□□ -2
LDB3O75112 MIR6733-201ENST00000635723 61 ntBASIC2.53□□□□□ -2
LDB3O75112 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
LDB3O75112 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
LDB3O75112 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
LDB3O75112 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LDB3O75112 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LDB3O75112 AC010615.1-201ENST00000594254 1764 ntBASIC2.52□□□□□ -2.01
LDB3O75112 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.52□□□□□ -2.01
LDB3O75112 Y_RNA.60-201ENST00000362831 98 ntBASIC2.52□□□□□ -2.01
LDB3O75112 SNORA5B-201ENST00000363786 132 ntBASIC2.52□□□□□ -2.01
LDB3O75112 RNU6-487P-201ENST00000365430 104 ntBASIC2.52□□□□□ -2.01
LDB3O75112 Y_RNA.471-201ENST00000384312 102 ntBASIC2.52□□□□□ -2.01
LDB3O75112 Y_RNA.551-201ENST00000384661 102 ntBASIC2.52□□□□□ -2.01
LDB3O75112 Y_RNA.556-201ENST00000384677 113 ntBASIC2.52□□□□□ -2.01
LDB3O75112 MIR147B-201ENST00000390185 80 ntBASIC2.52□□□□□ -2.01
LDB3O75112 SNORA69.1-201ENST00000390904 137 ntBASIC2.52□□□□□ -2.01
LDB3O75112 SNORA12.2-201ENST00000391040 156 ntBASIC2.52□□□□□ -2.01
LDB3O75112 RNU2-52P-201ENST00000410680 190 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.52□□□□□ -2.01
LDB3O75112 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.52□□□□□ -2.01
LDB3O75112 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.52□□□□□ -2.01
LDB3O75112 UBBP3-201ENST00000445497 241 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AL031659.1-201ENST00000447075 539 ntBASIC2.52□□□□□ -2.01
LDB3O75112 RNU6-1132P-201ENST00000459214 107 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AL049873.1-201ENST00000480540 376 ntBASIC2.52□□□□□ -2.01
LDB3O75112 GZMAP1-201ENST00000503054 631 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AC093852.1-201ENST00000503587 266 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.52□□□□□ -2.01
LDB3O75112 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.52□□□□□ -2.01
LDB3O75112 SNORA31.23-201ENST00000517219 133 ntBASIC2.52□□□□□ -2.01
LDB3O75112 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.52□□□□□ -2.01
LDB3O75112 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.52□□□□□ -2.01
LDB3O75112 MIR3128-201ENST00000581957 66 ntBASIC2.52□□□□□ -2.01
LDB3O75112 MIR4635-201ENST00000583759 79 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AC010928.2-201ENST00000588017 287 ntBASIC2.52□□□□□ -2.01
LDB3O75112 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.52□□□□□ -2.01
LDB3O75112 AC241585.2-209ENST00000638217 143 ntBASIC2.52□□□□□ -2.01
LDB3O75112 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
LDB3O75112 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
LDB3O75112 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.51□□□□□ -2.01
LDB3O75112 RNU6-222P-201ENST00000362438 107 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNU6-227P-201ENST00000362865 103 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNU6-770P-201ENST00000363929 105 ntBASIC2.51□□□□□ -2.01
LDB3O75112 Y_RNA.276-201ENST00000364732 109 ntBASIC2.51□□□□□ -2.01
LDB3O75112 Y_RNA.358-201ENST00000365491 99 ntBASIC2.51□□□□□ -2.01
LDB3O75112 MIR627-201ENST00000384979 97 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNU6-700P-201ENST00000391043 107 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNA5SP390-201ENST00000410191 113 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.51□□□□□ -2.01
LDB3O75112 AC007098.1-201ENST00000420122 367 ntBASIC2.51□□□□□ -2.01
LDB3O75112 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.51□□□□□ -2.01
LDB3O75112 RPS15AP7-201ENST00000439294 405 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC243964.1-201ENST00000441814 261 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC007969.2-201ENST00000441891 191 ntBASIC2.51□□□□□ -2.01
LDB3O75112 SNORD109B-201ENST00000458961 67 ntBASIC2.51□□□□□ -2.01
LDB3O75112 SNORD109A-201ENST00000459128 67 ntBASIC2.51□□□□□ -2.01
LDB3O75112 TOMM22P6-201ENST00000465035 409 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RPS26P21-201ENST00000475397 348 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RPL30P1-201ENST00000488676 339 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.51□□□□□ -2.01
LDB3O75112 RNA5SP356-201ENST00000515972 94 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNU2-53P-201ENST00000516257 147 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC144568.1-201ENST00000520139 137 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.51□□□□□ -2.01
LDB3O75112 AL590705.4-201ENST00000532209 134 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC007536.1-201ENST00000533382 349 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.51□□□□□ -2.01
LDB3O75112 AC073410.2-201ENST00000603240 332 ntBASIC2.51□□□□□ -2.01
LDB3O75112 AC011373.1-201ENST00000607270 237 ntBASIC2.51□□□□□ -2.01
LDB3O75112 RNU6-91P-201ENST00000607774 107 ntBASIC2.51□□□□□ -2.01
LDB3O75112 MIR7515-201ENST00000637837 67 ntBASIC2.51□□□□□ -2.01
LDB3O75112 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.51□□□□□ -2.01
LDB3O75112 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LDB3O75112 RBBP8P1-201ENST00000449447 1844 ntBASIC2.5□□□□□ -2.01
LDB3O75112 Y_RNA.152-201ENST00000363578 100 ntBASIC2.5□□□□□ -2.01
LDB3O75112 Y_RNA.458-201ENST00000384240 102 ntBASIC2.5□□□□□ -2.01
LDB3O75112 RNU6-713P-201ENST00000384761 107 ntBASIC2.5□□□□□ -2.01
LDB3O75112 MIR487A-201ENST00000385009 80 ntBASIC2.5□□□□□ -2.01
LDB3O75112 MIR9-1-201ENST00000385198 89 ntBASIC2.5□□□□□ -2.01
LDB3O75112 MIR190B-201ENST00000401119 79 ntBASIC2.5□□□□□ -2.01
LDB3O75112 AP000275.1-201ENST00000411943 390 ntBASIC2.5□□□□□ -2.01
LDB3O75112 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.5□□□□□ -2.01
LDB3O75112 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.5□□□□□ -2.01
LDB3O75112 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LDB3O75112 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.5□□□□□ -2.01
LDB3O75112 AP001025.1-201ENST00000486139 332 ntBASIC2.5□□□□□ -2.01
LDB3O75112 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.5□□□□□ -2.01
LDB3O75112 AC034114.1-201ENST00000520293 285 ntBASIC2.5□□□□□ -2.01
LDB3O75112 CKS1BP7-201ENST00000522230 235 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms