Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORA53-201ENST00000391141 249 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 RNU1-139P-201ENST00000391307 165 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.32□□□□□ -1.88
USP39Q53GS9 AC007919.1-201ENST00000429380 217 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 RPS15AP7-201ENST00000439294 405 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.650-201ENST00000459002 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AC091021.1-201ENST00000468051 388 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AP000870.1-201ENST00000472927 406 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AF186996.7-201ENST00000492781 209 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.662-201ENST00000516028 97 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.777-201ENST00000516982 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 MRPS18CP4-201ENST00000535821 231 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.32□□□□□ -1.88
USP39Q53GS9 MIR3144-201ENST00000579460 79 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.771-201ENST00000598668 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 MIR7106-201ENST00000612419 65 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AL365265.1-201ENST00000621045 234 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.789-201ENST00000622480 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 AC241585.2-209ENST00000638217 143 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.32□□□□□ -1.88
USP39Q53GS9 AL359693.1-201ENST00000614959 2407 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP39Q53GS9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP39Q53GS9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.31□□□□□ -1.88
USP39Q53GS9 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.31□□□□□ -1.88
USP39Q53GS9 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP39Q53GS9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.31□□□□□ -1.88
USP39Q53GS9 UBE2WP1-201ENST00000362030 340 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 RNA5SP361-201ENST00000362686 118 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 SNORA14A-201ENST00000364773 135 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 RNU6-968P-201ENST00000384076 107 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 Y_RNA.446-201ENST00000384178 104 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 Y_RNA.569-201ENST00000384749 103 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
USP39Q53GS9 SNORD12B-201ENST00000410433 91 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 RNA5SP31-201ENST00000411144 127 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.31□□□□□ -1.88
USP39Q53GS9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.31□□□□□ -1.88
USP39Q53GS9 RPL27AP8-201ENST00000424277 446 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AC098614.2-201ENST00000426040 255 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.31□□□□□ -1.88
USP39Q53GS9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.31□□□□□ -1.88
USP39Q53GS9 RNA5SP310-201ENST00000459084 116 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AC073901.1-201ENST00000462471 408 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 RPL23AP67-201ENST00000465341 474 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 KC877373.1-201ENST00000479066 408 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AK6P2-201ENST00000549020 471 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 MIR3921-201ENST00000577308 85 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 AC093732.2-201ENST00000607950 274 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 RMST_6.1-201ENST00000611980 203 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.31□□□□□ -1.88
USP39Q53GS9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP39Q53GS9 AC009541.1-201ENST00000438279 2662 ntBASIC3.31□□□□□ -1.88
USP39Q53GS9 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP39Q53GS9 RNU6-879P-201ENST00000364328 108 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RNU6-1286P-201ENST00000383871 107 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 Y_RNA.418-201ENST00000384029 102 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RNU6-843P-201ENST00000384454 104 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 MIR32-201ENST00000384965 70 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RNA5SP38-201ENST00000410750 119 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RNU2-61P-201ENST00000411069 191 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RNU6-1135P-201ENST00000411083 103 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.3□□□□□ -1.88
USP39Q53GS9 RPL23AP82-202ENST00000427528 469 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 AL031659.1-201ENST00000447075 539 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 Y_RNA.638-201ENST00000459374 113 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RN7SL863P-201ENST00000462370 296 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 CENPBD1P1-201ENST00000464061 469 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 RPL23AP14-201ENST00000468281 468 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 AC091874.1-201ENST00000511402 339 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.3□□□□□ -1.88
USP39Q53GS9 AL078605.1-201ENST00000603529 500 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 AC136601.2-201ENST00000604356 474 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.3□□□□□ -1.88
USP39Q53GS9 AC092435.3-201ENST00000565538 3654 ntBASIC3.3□□□□□ -1.88
USP39Q53GS9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP39Q53GS9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP39Q53GS9 RNU1-75P-201ENST00000347264 129 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 SNORA5B-201ENST00000363786 132 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 Z98749.2-208ENST00000381646 500 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 SNORA1.3-201ENST00000384676 136 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP39Q53GS9 Y_RNA.590-201ENST00000410140 107 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 RPL19P1-201ENST00000411635 428 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.29□□□□□ -1.88
USP39Q53GS9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.29□□□□□ -1.88
USP39Q53GS9 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP39Q53GS9 AC096638.1-201ENST00000444678 216 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.29□□□□□ -1.88
USP39Q53GS9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.29□□□□□ -1.88
USP39Q53GS9 RPS4XP22-201ENST00000480755 780 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 RNU6-1114P-201ENST00000516022 107 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 RNY3P16-201ENST00000516338 101 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 AC107934.2-201ENST00000518653 310 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 H3F3AP1-201ENST00000559984 334 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 CYCSP39-201ENST00000565821 309 ntBASIC3.29□□□□□ -1.88
USP39Q53GS9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 507.6 ms