Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 Z98751.3-201ENST00000604447 521 ntBASIC1.49□□□□□ -2.17
CLDN9O95484 AP001836.1-201ENST00000604675 523 ntBASIC1.49□□□□□ -2.17
CLDN9O95484 AC016925.2-201ENST00000605108 242 ntBASIC1.49□□□□□ -2.17
CLDN9O95484 SNORA32.2-201ENST00000384049 122 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 SNORA36A-201ENST00000384221 132 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 RNY1P14-201ENST00000384426 108 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 Y_RNA.540-201ENST00000384638 111 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 AL049545.1-201ENST00000401856 572 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 MIR1304-201ENST00000408243 91 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 RNU2-41P-201ENST00000410991 178 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.48□□□□□ -2.17
CLDN9O95484 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.48□□□□□ -2.17
CLDN9O95484 USP9YP29-201ENST00000445112 563 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.48□□□□□ -2.17
CLDN9O95484 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.48□□□□□ -2.17
CLDN9O95484 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.48□□□□□ -2.17
CLDN9O95484 MIR5094-201ENST00000578766 85 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.48□□□□□ -2.17
CLDN9O95484 PCGEM1.1-201ENST00000613431 131 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 AC022513.1-201ENST00000624512 117 ntBASIC1.48□□□□□ -2.17
CLDN9O95484 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.48□□□□□ -2.17
CLDN9O95484 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CLDN9O95484 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CLDN9O95484 RNU6-661P-201ENST00000362409 107 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 RNU6-378P-201ENST00000384324 107 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 MIR517C-201ENST00000385103 95 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 MIR934-201ENST00000401241 83 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.47□□□□□ -2.17
CLDN9O95484 AC002486.1-201ENST00000435098 391 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.47□□□□□ -2.17
CLDN9O95484 BET1P1-201ENST00000482276 359 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.47□□□□□ -2.17
CLDN9O95484 ARL2BPP4-201ENST00000506854 471 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC097473.1-201ENST00000508142 408 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 FAM206BP-201ENST00000510179 541 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 RNU5F-4P-201ENST00000516581 114 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 RNU6-567P-201ENST00000516746 107 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC021231.3-201ENST00000558497 370 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.47□□□□□ -2.17
CLDN9O95484 SUB1P4-201ENST00000566062 339 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 CYP4A27P-201ENST00000567218 190 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 MIR4528-201ENST00000577763 90 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.47□□□□□ -2.17
CLDN9O95484 MIR4303-201ENST00000581299 66 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.47□□□□□ -2.17
CLDN9O95484 AL078603.1-201ENST00000603824 313 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AC121247.2-201ENST00000604776 136 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.47□□□□□ -2.17
CLDN9O95484 AP000770.2-201ENST00000623694 100 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 AL450472.1-202ENST00000637286 180 ntBASIC1.47□□□□□ -2.17
CLDN9O95484 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.47□□□□□ -2.17
CLDN9O95484 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CLDN9O95484 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.47□□□□□ -2.17
CLDN9O95484 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CLDN9O95484 MIR340-201ENST00000362125 95 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 RNU6-996P-201ENST00000365438 107 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CLDN9O95484 SNORA12.2-201ENST00000391040 156 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 MIR208B-201ENST00000401172 77 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.46□□□□□ -2.18
CLDN9O95484 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.46□□□□□ -2.18
CLDN9O95484 VN1R108P-201ENST00000431580 830 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.46□□□□□ -2.18
CLDN9O95484 RPL31P3-201ENST00000458430 332 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 RNU7-180P-201ENST00000459240 63 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 RNU7-14P-201ENST00000459331 62 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 TOMM22P6-201ENST00000465035 409 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC005908.1-201ENST00000468701 347 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC027575.1-201ENST00000481064 460 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC010493.1-201ENST00000513479 292 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 Y_RNA.675-201ENST00000516389 149 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 RNU6-1098P-201ENST00000516772 96 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 EIF4A1P12-201ENST00000551910 141 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AC004223.2-201ENST00000590309 544 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 AL158063.1-201ENST00000615349 536 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 uc_338.34-201ENST00000617467 174 ntBASIC1.46□□□□□ -2.18
CLDN9O95484 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
CLDN9O95484 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CLDN9O95484 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CLDN9O95484 RNU6-338P-201ENST00000383888 105 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 MIR320A-201ENST00000385302 82 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 SNORD73A-201ENST00000386062 65 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 RNA5SP219-201ENST00000390940 113 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.45□□□□□ -2.18
CLDN9O95484 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.45□□□□□ -2.18
CLDN9O95484 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.45□□□□□ -2.18
CLDN9O95484 RPL21P111-201ENST00000418453 477 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC007098.1-201ENST00000420122 367 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC073464.1-201ENST00000429823 534 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC073415.1-201ENST00000449240 153 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CLDN9O95484 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.45□□□□□ -2.18
CLDN9O95484 AC008628.2-201ENST00000502605 298 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC096745.1-201ENST00000509945 370 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC092436.3-201ENST00000511788 257 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 RNA5SP220-201ENST00000516298 104 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 RNU6-970P-201ENST00000516312 107 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 SUMO2P18-201ENST00000518873 252 ntBASIC1.45□□□□□ -2.18
CLDN9O95484 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.45□□□□□ -2.18
CLDN9O95484 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms