Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC027176.1-201ENST00000560204 514 ntBASIC3.31□□□□□ -1.88
CBX4O00257 MYL12BP1-201ENST00000569826 507 ntBASIC3.31□□□□□ -1.88
CBX4O00257 AC010205.1-201ENST00000616668 449 ntBASIC3.31□□□□□ -1.88
CBX4O00257 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.31□□□□□ -1.88
CBX4O00257 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CBX4O00257 MIR7153-201ENST00000637758 57 ntBASIC3.31□□□□□ -1.88
CBX4O00257 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CBX4O00257 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.31□□□□□ -1.88
CBX4O00257 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CBX4O00257 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.31□□□□□ -1.88
CBX4O00257 ZNF204P-201ENST00000416749 2397 ntBASIC3.3□□□□□ -1.88
CBX4O00257 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CBX4O00257 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.3□□□□□ -1.88
CBX4O00257 Y_RNA.19-201ENST00000362462 99 ntBASIC3.3□□□□□ -1.88
CBX4O00257 RNU6-873P-201ENST00000363833 107 ntBASIC3.3□□□□□ -1.88
CBX4O00257 Y_RNA.193-201ENST00000363979 102 ntBASIC3.3□□□□□ -1.88
CBX4O00257 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.3□□□□□ -1.88
CBX4O00257 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CBX4O00257 EIF4EP4-201ENST00000424916 578 ntBASIC3.3□□□□□ -1.88
CBX4O00257 AC112220.1-201ENST00000434628 355 ntBASIC3.3□□□□□ -1.88
CBX4O00257 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.3□□□□□ -1.88
CBX4O00257 AC007215.1-201ENST00000464893 276 ntBASIC3.3□□□□□ -1.88
CBX4O00257 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.3□□□□□ -1.88
CBX4O00257 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.3□□□□□ -1.88
CBX4O00257 RNU6-1012P-201ENST00000516606 109 ntBASIC3.3□□□□□ -1.88
CBX4O00257 RN7SKP49-201ENST00000516675 260 ntBASIC3.3□□□□□ -1.88
CBX4O00257 LARP7P3-201ENST00000579888 337 ntBASIC3.3□□□□□ -1.88
CBX4O00257 MIR4659A-201ENST00000580269 81 ntBASIC3.3□□□□□ -1.88
CBX4O00257 AC125232.2-201ENST00000592457 143 ntBASIC3.3□□□□□ -1.88
CBX4O00257 SNRPGP20-201ENST00000604477 205 ntBASIC3.3□□□□□ -1.88
CBX4O00257 PCGEM1.1-201ENST00000613431 131 ntBASIC3.3□□□□□ -1.88
CBX4O00257 AC240442.1-201ENST00000616055 283 ntBASIC3.3□□□□□ -1.88
CBX4O00257 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.3□□□□□ -1.88
CBX4O00257 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CBX4O00257 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CBX4O00257 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
CBX4O00257 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CBX4O00257 RNA5SP361-201ENST00000362686 118 ntBASIC3.29□□□□□ -1.88
CBX4O00257 U3.9-201ENST00000363823 204 ntBASIC3.29□□□□□ -1.88
CBX4O00257 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
CBX4O00257 RNU6-245P-201ENST00000384020 107 ntBASIC3.29□□□□□ -1.88
CBX4O00257 RNU6-318P-201ENST00000384283 103 ntBASIC3.29□□□□□ -1.88
CBX4O00257 RNU6-378P-201ENST00000384324 107 ntBASIC3.29□□□□□ -1.88
CBX4O00257 Y_RNA.512-201ENST00000384518 102 ntBASIC3.29□□□□□ -1.88
CBX4O00257 RNA5SP229-201ENST00000410809 99 ntBASIC3.29□□□□□ -1.88
CBX4O00257 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.29□□□□□ -1.88
CBX4O00257 COTL1P1-201ENST00000422309 375 ntBASIC3.29□□□□□ -1.88
CBX4O00257 AC025750.2-201ENST00000442609 450 ntBASIC3.29□□□□□ -1.88
CBX4O00257 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.29□□□□□ -1.88
CBX4O00257 S100A11P2-201ENST00000467589 312 ntBASIC3.29□□□□□ -1.88
CBX4O00257 AC145146.1-201ENST00000496370 254 ntBASIC3.29□□□□□ -1.88
CBX4O00257 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.29□□□□□ -1.88
CBX4O00257 SNORA25.14-201ENST00000516481 132 ntBASIC3.29□□□□□ -1.88
CBX4O00257 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.29□□□□□ -1.88
CBX4O00257 EIF4A1P12-201ENST00000551910 141 ntBASIC3.29□□□□□ -1.88
CBX4O00257 MIR5004-201ENST00000579078 107 ntBASIC3.29□□□□□ -1.88
CBX4O00257 MIR8062-201ENST00000621515 85 ntBASIC3.29□□□□□ -1.88
CBX4O00257 BX322639.1-202ENST00000423987 2213 ntBASIC3.29□□□□□ -1.88
CBX4O00257 AC110774.1-201ENST00000623567 2018 ntBASIC3.29□□□□□ -1.88
CBX4O00257 AC069528.2-201ENST00000624849 1991 ntBASIC3.29□□□□□ -1.88
CBX4O00257 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CBX4O00257 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.28□□□□□ -1.88
CBX4O00257 snoU2_19.1-201ENST00000362361 80 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNU4-15P-201ENST00000362613 141 ntBASIC3.28□□□□□ -1.88
CBX4O00257 AP002088.1-201ENST00000382740 395 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNU6-926P-201ENST00000384075 107 ntBASIC3.28□□□□□ -1.88
CBX4O00257 Y_RNA.510-201ENST00000384511 114 ntBASIC3.28□□□□□ -1.88
CBX4O00257 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CBX4O00257 MRPL35P1-201ENST00000404272 572 ntBASIC3.28□□□□□ -1.88
CBX4O00257 MIR1289-1-201ENST00000408836 144 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNA5SP201-201ENST00000410316 124 ntBASIC3.28□□□□□ -1.88
CBX4O00257 SNORD12B-201ENST00000410433 91 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNU4-47P-201ENST00000410876 114 ntBASIC3.28□□□□□ -1.88
CBX4O00257 Y_RNA.618-201ENST00000410949 107 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNU6-130P-201ENST00000411112 103 ntBASIC3.28□□□□□ -1.88
CBX4O00257 RNU6-1001P-201ENST00000411265 100 ntBASIC3.28□□□□□ -1.88
CBX4O00257 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.28□□□□□ -1.88
CBX4O00257 AC109925.1-201ENST00000478069 331 ntBASIC3.28□□□□□ -1.88
CBX4O00257 AC026470.2-201ENST00000561492 181 ntBASIC3.28□□□□□ -1.88
CBX4O00257 MIR2682-201ENST00000580305 110 ntBASIC3.28□□□□□ -1.88
CBX4O00257 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.28□□□□□ -1.88
CBX4O00257 RPL30P11-203ENST00000598995 310 ntBASIC3.28□□□□□ -1.88
CBX4O00257 AC010999.1-201ENST00000611856 324 ntBASIC3.28□□□□□ -1.88
CBX4O00257 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.28□□□□□ -1.88
CBX4O00257 AP003122.5-201ENST00000527668 3766 ntBASIC3.27□□□□□ -1.89
CBX4O00257 MIR1302-6-201ENST00000408466 90 ntBASIC3.27□□□□□ -1.89
CBX4O00257 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.27□□□□□ -1.89
CBX4O00257 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.27□□□□□ -1.89
CBX4O00257 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.27□□□□□ -1.89
CBX4O00257 AC006539.3-201ENST00000454258 129 ntBASIC3.27□□□□□ -1.89
CBX4O00257 HMGN1P18-201ENST00000457642 277 ntBASIC3.27□□□□□ -1.89
CBX4O00257 RN7SL863P-201ENST00000462370 296 ntBASIC3.27□□□□□ -1.89
CBX4O00257 MTND4LP22-201ENST00000508209 276 ntBASIC3.27□□□□□ -1.89
CBX4O00257 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.27□□□□□ -1.89
CBX4O00257 AL033523.1-201ENST00000605153 153 ntBASIC3.27□□□□□ -1.89
CBX4O00257 MIR7515-201ENST00000637837 67 ntBASIC3.27□□□□□ -1.89
CBX4O00257 AC058791.1-201ENST00000608412 3198 ntBASIC3.27□□□□□ -1.89
CBX4O00257 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CBX4O00257 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CBX4O00257 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms