Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
SCN2AQ99250 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SCN2AQ99250 Y_RNA.2-201ENST00000362330 96 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 Y_RNA.100-201ENST00000363141 102 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RNY4P14-201ENST00000363656 96 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 Y_RNA.409-201ENST00000383990 98 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 EIF4E2P1-201ENST00000393781 255 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 IPO7P1-201ENST00000442031 636 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 PSPHP1-201ENST00000450062 261 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RPS29P27-201ENST00000463711 170 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 CCDC34P1-201ENST00000507441 517 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RNU6-250P-201ENST00000516958 103 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN2AQ99250 IMMP1LP2-201ENST00000552954 492 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 MIR4529-201ENST00000578110 78 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AP003465.2-201ENST00000602571 373 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RMST_7.1-201ENST00000621935 268 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AC068137.4-201ENST00000638485 296 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AC092268.1-201ENST00000342691 405 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 Y_RNA.9-201ENST00000362354 101 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RNU1-72P-201ENST00000362976 153 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RNU1-52P-201ENST00000384190 164 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RNU6-45P-201ENST00000384471 107 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 MIR561-201ENST00000385216 97 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 CBX3P9-201ENST00000402326 552 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 POLHP1-201ENST00000411806 470 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 FCF1P9-201ENST00000412546 282 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SCN2AQ99250 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 SNORA31.25-201ENST00000517242 134 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
SCN2AQ99250 AC118273.2-201ENST00000532092 465 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN2AQ99250 DNAJC19P9-201ENST00000555084 351 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AL118558.2-201ENST00000556294 238 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 FGF7P1-201ENST00000582820 288 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 AC091135.1-201ENST00000585943 307 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SCN2AQ99250 AC068944.2-201ENST00000610373 403 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 RMST_3.1-201ENST00000611651 109 ntBASIC1.61□□□□□ -2.15
SCN2AQ99250 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SCN2AQ99250 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SCN2AQ99250 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
SCN2AQ99250 Y_RNA.151-201ENST00000363566 112 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 RNU4-12P-201ENST00000365233 139 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AL357139.1-201ENST00000407792 426 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN2AQ99250 RPL9P9-202ENST00000466501 579 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AF186996.7-201ENST00000492781 209 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 Y_RNA.693-201ENST00000516641 110 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 RNU6-965P-201ENST00000516721 96 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 MIR4287-201ENST00000579398 78 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.6□□□□□ -2.15
SCN2AQ99250 MTATP6P3-201ENST00000581686 676 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.6□□□□□ -2.15
SCN2AQ99250 MIR502-201ENST00000606349 86 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AC064836.2-201ENST00000609491 462 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AC097372.5-201ENST00000623665 376 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 SNORD98-201ENST00000636377 67 ntBASIC1.6□□□□□ -2.15
SCN2AQ99250 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.6□□□□□ -2.15
SCN2AQ99250 RNU6-451P-201ENST00000362921 107 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 RNU6-534P-201ENST00000364877 106 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 RNU6-26P-201ENST00000383985 107 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SCN2AQ99250 RNU6-510P-201ENST00000391239 108 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 AP000275.1-201ENST00000411943 390 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 SNRPEP10-201ENST00000420249 274 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 MTND1P2-201ENST00000430604 821 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 RNU7-187P-201ENST00000458985 68 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 AC130509.1-201ENST00000464158 433 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.59□□□□□ -2.15
SCN2AQ99250 TRBVA-201ENST00000498804 316 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 Y_RNA.665-201ENST00000516177 98 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 RNU2-53P-201ENST00000516257 147 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN2AQ99250 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.59□□□□□ -2.15
SCN2AQ99250 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.59□□□□□ -2.15
SCN2AQ99250 TRAV32-201ENST00000553993 340 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 TPRKBP2-201ENST00000565969 475 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 AC010525.2-201ENST00000590920 195 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 AC025165.5-201ENST00000602802 578 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 OR4G1P-203ENST00000641984 1631 ntBASIC1.59□□□□□ -2.15
SCN2AQ99250 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.59□□□□□ -2.16
SCN2AQ99250 RNU6-827P-201ENST00000365553 106 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 RNU6-214P-201ENST00000384130 107 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 MIR29C-201ENST00000385231 88 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 RNA5SP118-201ENST00000410385 109 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 Y_RNA.597-201ENST00000410463 100 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN2AQ99250 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN2AQ99250 SNORA40.12-201ENST00000516329 111 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 RNU6-566P-201ENST00000516790 107 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.59□□□□□ -2.16
SCN2AQ99250 AC025678.1-201ENST00000567861 338 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 AC007229.1-201ENST00000590455 412 ntBASIC1.59□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms