Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 RN7SL703P-201ENST00000578485 302 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC244505.7-201ENST00000599675 272 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC010620.2-201ENST00000600135 313 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC110741.2-201ENST00000605278 268 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 MIR5739-201ENST00000619803 80 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC008873.1-201ENST00000625051 138 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 U6.115-201ENST00000636045 103 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.15□□□□□ -1.9
CCDC140Q96MF4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC140Q96MF4 AC010329.5-201ENST00000623497 2174 ntBASIC3.15□□□□□ -1.9
CCDC140Q96MF4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.15□□□□□ -1.9
CCDC140Q96MF4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 RNU6-886P-201ENST00000384319 105 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 MIR93-201ENST00000385024 80 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 RNU6-493P-201ENST00000391321 108 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 MIR1185-2-201ENST00000408687 86 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 SNORA11-201ENST00000408789 128 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AC126124.2-201ENST00000413542 321 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AL159169.1-201ENST00000421119 127 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AC004975.1-201ENST00000428733 208 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AC069285.2-201ENST00000440210 275 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AC016717.1-201ENST00000448918 286 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 RPS29P2-201ENST00000479278 136 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 Z83818.1-201ENST00000603584 150 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AL365265.1-201ENST00000621045 234 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AL773545.4-201ENST00000637262 310 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 AL513478.4-201ENST00000641636 310 ntBASIC3.15□□□□□ -1.91
CCDC140Q96MF4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC140Q96MF4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AP003122.5-201ENST00000527668 3766 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 RNU6-1272P-201ENST00000362776 107 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 SNORD74.4-201ENST00000364129 80 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 RNU6-438P-201ENST00000365561 103 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 MIR300-201ENST00000401138 83 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 FO393413.1-201ENST00000402892 195 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AL139095.1-201ENST00000404326 391 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 MIR1193-201ENST00000408109 78 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AL139281.1-201ENST00000422120 335 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AL691449.1-201ENST00000426570 421 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 SNORA31.9-201ENST00000516429 84 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 RNU6-861P-201ENST00000516745 106 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AC025627.2-201ENST00000576220 160 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AL008718.3-201ENST00000610217 321 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AC015813.4-201ENST00000610469 179 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 AC068724.3-201ENST00000625906 87 ntBASIC3.14□□□□□ -1.91
CCDC140Q96MF4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC140Q96MF4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 RNU6-763P-201ENST00000390865 106 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 RNA5SP306-201ENST00000411087 107 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 RNU2-32P-201ENST00000411193 191 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 DBIP2-201ENST00000419076 262 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 CYCSP35-201ENST00000451978 304 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 U8.19-201ENST00000459095 133 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 RNU7-120P-201ENST00000459334 63 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 Y_RNA.637-201ENST00000459424 114 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC109925.1-201ENST00000478069 331 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC025445.1-201ENST00000502728 300 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 RN7SKP21-201ENST00000516503 220 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC009127.3-201ENST00000570531 403 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 MIR1248-201ENST00000629190 106 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC016588.2-201ENST00000632484 3021 ntBASIC3.13□□□□□ -1.91
CCDC140Q96MF4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC140Q96MF4 AC134026.1-201ENST00000623249 2239 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms