Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AF186996.7-201ENST00000492781 209 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 AC091874.1-201ENST00000511402 339 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 SCGB1D5P-201ENST00000515134 247 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 SNORA31.6-201ENST00000516241 130 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 MIR2276-201ENST00000516886 89 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 MIR3690-201ENST00000580266 75 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 MIR376A1-201ENST00000616574 68 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 MIR6134-201ENST00000617606 109 ntBASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.13□□□□□ -1.91
SLC44A3Q8N4M1 LINC02555-201ENST00000563933 1951 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-222P-201ENST00000362438 107 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-1301P-201ENST00000362724 104 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 SNORD81.1-201ENST00000363064 77 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 SNORD115-32-201ENST00000364079 82 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 SNORD32A-201ENST00000364805 84 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-1286P-201ENST00000383871 107 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU1-73P-201ENST00000383971 164 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.439-201ENST00000384119 94 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-658P-201ENST00000384606 106 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.581-201ENST00000391017 97 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AL079342.1-201ENST00000401460 267 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC245291.1-201ENST00000419501 328 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 TMEM167AP1-201ENST00000423409 219 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RPL23AP95-201ENST00000426806 265 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RPL21P40-201ENST00000428586 483 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC125238.1-201ENST00000448842 249 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AL109933.2-201ENST00000452651 260 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 HMGN2P16-201ENST00000456802 261 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 HMGN1P18-201ENST00000457642 277 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RPL23AP75-201ENST00000491601 451 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 RNU5B-3P-201ENST00000516601 115 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC093023.1-201ENST00000547375 507 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 LINC00933-203ENST00000559812 219 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC098479.1-201ENST00000609225 154 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 SNORA43.4-201ENST00000629559 138 ntBASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.12□□□□□ -1.91
SLC44A3Q8N4M1 AC233981.2-201ENST00000611524 1614 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 RNA5SP383-201ENST00000362934 120 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-338P-201ENST00000383888 105 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.785-201ENST00000384290 109 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC096920.1-201ENST00000423991 241 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC009296.1-201ENST00000443146 155 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 SUMO1P2-201ENST00000452524 304 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 RNU7-87P-201ENST00000459343 62 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC117440.1-201ENST00000474107 571 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 HMGB1P35-201ENST00000503360 598 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC010186.2-204ENST00000537668 439 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC240442.1-201ENST00000616055 283 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 AC009541.1-201ENST00000438279 2662 ntBASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SLC44A3Q8N4M1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AL136164.4-201ENST00000625013 2135 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AL391987.6-201ENST00000305671 199 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.16-201ENST00000362421 102 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.117-201ENST00000363294 101 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 SNORD27-201ENST00000363981 72 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RNU1-100P-201ENST00000365255 165 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-968P-201ENST00000384076 107 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 SNORA18.3-201ENST00000384122 132 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-318P-201ENST00000384283 103 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-851P-201ENST00000384565 107 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 Y_RNA.541-201ENST00000384640 113 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AC007969.2-201ENST00000441891 191 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RPS26P21-201ENST00000475397 348 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RNU6-1338P-201ENST00000516328 91 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RN7SKP40-201ENST00000517211 242 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AC068657.1-201ENST00000520807 306 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 MIR4474-201ENST00000579189 78 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 MIR4435-1-201ENST00000582552 80 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 RMST_6.1-201ENST00000611980 203 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 AC091903.1-201ENST00000624322 454 ntBASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SLC44A3Q8N4M1 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.09□□□□□ -1.91
SLC44A3Q8N4M1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.09□□□□□ -1.91
SLC44A3Q8N4M1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
SLC44A3Q8N4M1 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.09□□□□□ -1.91
SLC44A3Q8N4M1 RNU5B-2P-201ENST00000363036 113 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms