Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 Y_RNA.673-201ENST00000516306 88 ntBASIC4.01□□□□□ -1.77
USP48Q86UV5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.01□□□□□ -1.77
USP48Q86UV5 AP003733.2-201ENST00000529409 171 ntBASIC4.01□□□□□ -1.77
USP48Q86UV5 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.01□□□□□ -1.77
USP48Q86UV5 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.01□□□□□ -1.77
USP48Q86UV5 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP48Q86UV5 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.01□□□□□ -1.77
USP48Q86UV5 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP48Q86UV5 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4□□□□□ -1.77
USP48Q86UV5 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
USP48Q86UV5 RNU6-222P-201ENST00000362438 107 ntBASIC4□□□□□ -1.77
USP48Q86UV5 RNU6-1159P-201ENST00000362933 107 ntBASIC4□□□□□ -1.77
USP48Q86UV5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4□□□□□ -1.77
USP48Q86UV5 RNY3P4-201ENST00000384428 101 ntBASIC4□□□□□ -1.77
USP48Q86UV5 RNU6-541P-201ENST00000384709 110 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AL133475.1-201ENST00000404414 305 ntBASIC4□□□□□ -1.77
USP48Q86UV5 CYCSP48-201ENST00000417124 323 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AC004383.1-201ENST00000438135 289 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AC107083.1-201ENST00000439643 279 ntBASIC4□□□□□ -1.77
USP48Q86UV5 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4□□□□□ -1.77
USP48Q86UV5 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4□□□□□ -1.77
USP48Q86UV5 SNORA40.15-201ENST00000516884 107 ntBASIC4□□□□□ -1.77
USP48Q86UV5 RNU6-570P-201ENST00000517051 105 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AP002770.2-201ENST00000543613 532 ntBASIC4□□□□□ -1.77
USP48Q86UV5 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4□□□□□ -1.77
USP48Q86UV5 AC093732.2-201ENST00000607950 274 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AC130454.1-201ENST00000622948 401 ntBASIC4□□□□□ -1.77
USP48Q86UV5 AL450472.1-202ENST00000637286 180 ntBASIC4□□□□□ -1.77
USP48Q86UV5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP48Q86UV5 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4□□□□□ -1.77
USP48Q86UV5 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
USP48Q86UV5 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP48Q86UV5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
USP48Q86UV5 MTND5P6-201ENST00000422338 1798 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP48Q86UV5 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
USP48Q86UV5 SNORA36A-201ENST00000384221 132 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.99□□□□□ -1.77
USP48Q86UV5 AL590135.1-201ENST00000422215 156 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC019205.3-201ENST00000424573 156 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC016700.2-201ENST00000446011 156 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.99□□□□□ -1.77
USP48Q86UV5 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.99□□□□□ -1.77
USP48Q86UV5 HMGN1P18-201ENST00000457642 277 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 U8.22-201ENST00000459141 133 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 RNU7-170P-201ENST00000459303 61 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC109925.1-201ENST00000478069 331 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.99□□□□□ -1.77
USP48Q86UV5 AC104027.1-201ENST00000521887 300 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 AC026470.2-201ENST00000561492 181 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.99□□□□□ -1.77
USP48Q86UV5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP48Q86UV5 GABRG2-229ENST00000641017 3628 ntBASIC3.99□□□□□ -1.77
USP48Q86UV5 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP48Q86UV5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP48Q86UV5 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU6-1010P-201ENST00000362757 107 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 SNORD114-19-201ENST00000363072 75 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 Y_RNA.183-201ENST00000363882 113 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 Y_RNA.319-201ENST00000365138 92 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 Y_RNA.458-201ENST00000384240 102 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU4-70P-201ENST00000384579 139 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 MIR215-201ENST00000384858 110 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU1-139P-201ENST00000391307 165 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AL159169.1-201ENST00000421119 127 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 SDAD1P3-201ENST00000427380 333 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 MTND2P29-201ENST00000438595 412 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.98□□□□□ -1.77
USP48Q86UV5 CENPBD1P1-201ENST00000464061 469 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RPL39P38-201ENST00000467018 153 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.98□□□□□ -1.77
USP48Q86UV5 AP000870.1-201ENST00000472927 406 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AC010469.2-201ENST00000496412 480 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 HMGB3P17-201ENST00000504195 649 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU6-1114P-201ENST00000516022 107 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU6-567P-201ENST00000516746 107 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU6-1198P-201ENST00000516904 67 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 RNU6-111P-201ENST00000517179 105 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AC022868.1-201ENST00000517767 391 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.98□□□□□ -1.77
USP48Q86UV5 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP48Q86UV5 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.98□□□□□ -1.77
USP48Q86UV5 AL138963.2-201ENST00000605137 226 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AP001282.2-201ENST00000616149 309 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 SDR42E1P4-201ENST00000620894 481 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.98□□□□□ -1.77
USP48Q86UV5 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.98□□□□□ -1.77
USP48Q86UV5 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP48Q86UV5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP48Q86UV5 AC103988.1-201ENST00000566382 2177 ntBASIC3.97□□□□□ -1.77
USP48Q86UV5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.97□□□□□ -1.77
USP48Q86UV5 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP48Q86UV5 RNU6-212P-201ENST00000362642 104 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms