Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DYNLT3P1-201ENST00000378574 347 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL8A1P27658 RNU1-73P-201ENST00000383971 164 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 Y_RNA.593-201ENST00000410292 98 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AC099548.1-201ENST00000421443 426 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.86□□□□□ -1.79
COL8A1P27658 PPIAP15-201ENST00000479662 484 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AC108022.1-201ENST00000493466 478 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 RPL23AP54-201ENST00000495129 419 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 SNORD116-26-201ENST00000516006 96 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 RNA5SP49-201ENST00000516450 115 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 RNU1-117P-201ENST00000517041 158 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 RNU6-365P-201ENST00000517113 106 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.86□□□□□ -1.79
COL8A1P27658 AL049861.1-201ENST00000603130 150 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AL606490.9-201ENST00000603331 271 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 SNORA51-201ENST00000606420 132 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AL021997.2-201ENST00000615674 271 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 AC005562.2-201ENST00000618264 111 ntBASIC3.86□□□□□ -1.79
COL8A1P27658 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.86□□□□□ -1.79
COL8A1P27658 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.86□□□□□ -1.79
COL8A1P27658 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.86□□□□□ -1.79
COL8A1P27658 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL8A1P27658 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 AL159152.1-201ENST00000635019 2587 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 RNU1-75P-201ENST00000347264 129 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 Y_RNA.342-201ENST00000365352 113 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 RNU6-622P-201ENST00000384272 103 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 MIR634-201ENST00000385208 97 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL8A1P27658 EI24P2-201ENST00000397776 1076 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 HMGN2P30-201ENST00000423237 256 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 RN7SL517P-201ENST00000462240 305 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 RPL23AP62-201ENST00000463396 453 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 SRIP1-201ENST00000489235 288 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 RPL36AP21-201ENST00000490372 323 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 RNU6-113P-201ENST00000516653 101 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 SNORA31.20-201ENST00000517111 133 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 AL161713.1-201ENST00000555538 145 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 MTND6P33-201ENST00000571794 183 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 MIR5009-201ENST00000578736 100 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 FTX_3.1-201ENST00000610451 147 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.85□□□□□ -1.79
COL8A1P27658 AC002543.1-201ENST00000299783 1954 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL8A1P27658 AL592182.3-201ENST00000642132 3304 ntBASIC3.85□□□□□ -1.79
COL8A1P27658 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.85□□□□□ -1.79
COL8A1P27658 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.84□□□□□ -1.79
COL8A1P27658 MAPK10-286ENST00000641208 8747 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
COL8A1P27658 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 MIR302B-201ENST00000362188 73 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 Y_RNA.91-201ENST00000363042 107 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 AIG1P1-201ENST00000503376 148 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.84□□□□□ -1.79
COL8A1P27658 RNU4-60P-201ENST00000517239 135 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.84□□□□□ -1.79
COL8A1P27658 CYCSP40-201ENST00000575927 294 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 AC019176.2-201ENST00000611579 315 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
COL8A1P27658 AC018692.3-201ENST00000623929 123 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 MAPK10-303ENST00000641324 3959 ntBASIC3.84□□□□□ -1.79
COL8A1P27658 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL8A1P27658 AC007256.1-201ENST00000392253 2765 ntBASIC3.84□□□□□ -1.8
COL8A1P27658 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL8A1P27658 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
COL8A1P27658 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 ZFRP1-201ENST00000457579 2970 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 Y_RNA.93-201ENST00000363066 109 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 RNU6-1280P-201ENST00000365211 107 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 SNORA26-201ENST00000391286 122 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 SNORA19.1-201ENST00000410656 129 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 RPL23AP82-202ENST00000427528 469 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 AC073261.1-201ENST00000429409 121 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 RPL23AP7-203ENST00000449021 469 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 CENPBD1P1-201ENST00000464061 469 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms