Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
NPAS3Q8IXF0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 AL592182.3-201ENST00000642132 3304 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 Z98749.2-208ENST00000381646 500 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 HDGFP1-201ENST00000405943 252 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 RNU6-603P-201ENST00000411403 107 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 AC005300.1-201ENST00000428401 373 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 RPL23AP14-201ENST00000468281 468 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 RNU1-117P-201ENST00000517041 158 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 HSPE1P5-201ENST00000561489 272 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 MIR5009-201ENST00000578736 100 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 5S_rRNA.11-201ENST00000618635 84 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 MIR6500-201ENST00000622700 86 ntBASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.34□□□□□ -1.71
NPAS3Q8IXF0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.34□□□□□ -1.72
NPAS3Q8IXF0 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AL672296.1-201ENST00000427780 2158 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 SNORA71.3-201ENST00000362582 128 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 MIR320B2-201ENST00000408479 138 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 RNU2-70P-201ENST00000410718 179 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 RNA5SP136-201ENST00000410906 107 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AC019205.3-201ENST00000424573 156 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AC078817.1-201ENST00000492623 435 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 RNU6-1183P-201ENST00000517054 60 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 LINC00933-203ENST00000559812 219 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 MIR5685-201ENST00000579080 79 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AL162713.1-201ENST00000604480 262 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AL137843.1-201ENST00000605078 385 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 AL138880.2-201ENST00000616214 239 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 U73479.1-201ENST00000618062 168 ntBASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NPAS3Q8IXF0 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 Z73965.1-201ENST00000623412 2297 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.91-201ENST00000363042 107 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 SNORA63D-201ENST00000364359 132 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 RNU4-41P-201ENST00000364426 143 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 MIR518C-201ENST00000384822 101 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 SNORD66.1-201ENST00000391230 76 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 MIR208B-201ENST00000401172 77 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AC078809.1-201ENST00000427601 140 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AL356867.1-201ENST00000429623 299 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 MTATP6P21-201ENST00000440681 189 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AL500522.2-201ENST00000448562 343 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 U6.115-201ENST00000636045 103 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 AC016588.2-201ENST00000632484 3021 ntBASIC4.32□□□□□ -1.72
NPAS3Q8IXF0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 MIR302B-201ENST00000362188 73 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.111-201ENST00000363248 100 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 RNU6-776P-201ENST00000364403 104 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 RNU6-1022P-201ENST00000365049 104 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 SNORA70.4-201ENST00000365509 134 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.362-201ENST00000365518 110 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.437-201ENST00000384113 113 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 MIR1179-201ENST00000408703 91 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 HSPE1P12-201ENST00000412576 301 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AL133547.1-201ENST00000448546 220 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms