Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
HOXA4Q00056 AC002543.1-201ENST00000299783 1954 ntBASIC2.78□□□□□ -1.97
HOXA4Q00056 AC007256.1-201ENST00000392253 2765 ntBASIC2.78□□□□□ -1.97
HOXA4Q00056 TNPO1P3-201ENST00000436471 2662 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 AL035425.3-201ENST00000564206 4996 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
HOXA4Q00056 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA4Q00056 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
HOXA4Q00056 Y_RNA.60-201ENST00000362831 98 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 SNORA70.4-201ENST00000365509 134 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 Y_RNA.562-201ENST00000384695 113 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 MIR329-1-201ENST00000385028 80 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 RNU6-847P-201ENST00000411115 108 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 RNU6-1001P-201ENST00000411265 100 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA4Q00056 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA4Q00056 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA4Q00056 RPL39P38-201ENST00000467018 153 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 RNU5F-2P-201ENST00000516066 82 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 SNORA70.14-201ENST00000516205 110 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 Y_RNA.673-201ENST00000516306 88 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 Y_RNA.713-201ENST00000517013 96 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXA4Q00056 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXA4Q00056 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 AC105137.2-201ENST00000569073 466 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
HOXA4Q00056 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 AL138963.2-201ENST00000605137 226 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 AC012531.5-201ENST00000611375 151 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 MIR7112-201ENST00000616126 65 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 AC084757.4-201ENST00000616350 526 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 SDR42E1P4-201ENST00000620894 481 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 SNORD98-201ENST00000636377 67 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA4Q00056 GABRG2-229ENST00000641017 3628 ntBASIC2.77□□□□□ -1.97
HOXA4Q00056 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA4Q00056 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA4Q00056 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXA4Q00056 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 Y_RNA.257-201ENST00000364596 102 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 RNA5SP267-201ENST00000364893 126 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 Y_RNA.518-201ENST00000384552 113 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 MIR147B-201ENST00000390185 80 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 Y_RNA.602-201ENST00000410535 92 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 RNA5SP229-201ENST00000410809 99 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AC096649.2-201ENST00000416186 393 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA4Q00056 MTND4LP30-201ENST00000454092 297 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 GZMAP1-201ENST00000503054 631 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AC115990.1-201ENST00000526957 301 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 MIR4644-201ENST00000579929 84 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AL109918.3-201ENST00000603072 338 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AL391813.1-201ENST00000603098 260 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 AC010900.2-201ENST00000604508 210 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.76□□□□□ -1.97
HOXA4Q00056 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA4Q00056 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA4Q00056 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA4Q00056 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXA4Q00056 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA4Q00056 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXA4Q00056 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA4Q00056 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXA4Q00056 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HOXA4Q00056 Y_RNA.16-201ENST00000362421 102 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SNORD113-8-201ENST00000363497 74 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-137P-201ENST00000363680 108 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SNORD115-8-201ENST00000363856 82 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SNORD46.1-201ENST00000364139 104 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 Y_RNA.237-201ENST00000364439 102 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SNORD115-38-201ENST00000365037 82 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SNORD6-201ENST00000365444 73 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-1145P-201ENST00000384246 107 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA4Q00056 AC096920.1-201ENST00000423991 241 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA4Q00056 AC010095.1-201ENST00000443543 144 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 AC006539.3-201ENST00000454258 129 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA4Q00056 AL441985.1-201ENST00000457727 251 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 AP001324.2-201ENST00000461163 319 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 HMGB1P35-201ENST00000503360 598 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-1023P-201ENST00000516137 106 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms