Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.72■□□□□ 0.27
MMP28Q9H239 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 AC068338.2-201ENST00000563278 1430 ntBASIC16.71■□□□□ 0.27
MMP28Q9H239 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MMP28Q9H239 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
MMP28Q9H239 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MMP28Q9H239 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MMP28Q9H239 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.71■□□□□ 0.27
MMP28Q9H239 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.71■□□□□ 0.27
MMP28Q9H239 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.71■□□□□ 0.27
MMP28Q9H239 AL109923.1-201ENST00000618799 583 ntBASIC16.71■□□□□ 0.27
MMP28Q9H239 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MMP28Q9H239 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MMP28Q9H239 AL512353.2-201ENST00000448759 1962 ntBASIC16.71■□□□□ 0.27
MMP28Q9H239 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
MMP28Q9H239 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.26
MMP28Q9H239 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
MMP28Q9H239 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
MMP28Q9H239 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.7■□□□□ 0.26
MMP28Q9H239 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
MMP28Q9H239 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 AC008764.6-201ENST00000595909 2069 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 TEX21P-204ENST00000641479 1693 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 AL355802.2-201ENST00000402069 882 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.7■□□□□ 0.26
MMP28Q9H239 AC069236.1-201ENST00000604339 616 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.7■□□□□ 0.26
MMP28Q9H239 AC008694.1-202ENST00000636953 945 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
MMP28Q9H239 ESPNP-201ENST00000270691 2015 ntBASIC16.7■□□□□ 0.26
MMP28Q9H239 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MMP28Q9H239 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.69■□□□□ 0.26
MMP28Q9H239 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 MIR663A-201ENST00000385250 93 ntBASIC16.69■□□□□ 0.26
MMP28Q9H239 CYP2T1P-201ENST00000432607 1285 ntBASIC16.69■□□□□ 0.26
MMP28Q9H239 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 AC016405.3-201ENST00000607710 860 ntBASIC16.69■□□□□ 0.26
MMP28Q9H239 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms