Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 AP003097.1-201ENST00000530657 1135 ntBASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM56Q9BRZ2 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
TRIM56Q9BRZ2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 AC069544.1-201ENST00000609399 999 ntBASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM56Q9BRZ2 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 MTDHP1-201ENST00000605323 784 ntBASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 HLA-A-209ENST00000638375 975 ntBASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 NBPF21P-201ENST00000425093 1451 ntBASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM56Q9BRZ2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 AL031598.1-201ENST00000561511 1773 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms