Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
IFT140Q96RY7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
IFT140Q96RY7 UPF3AP3-201ENST00000420996 769 ntBASIC31.45■■■□□ 2.62
IFT140Q96RY7 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC31.45■■■□□ 2.62
IFT140Q96RY7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC31.45■■■□□ 2.62
IFT140Q96RY7 AC114341.1-201ENST00000618070 349 ntBASIC31.45■■■□□ 2.62
IFT140Q96RY7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
IFT140Q96RY7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
IFT140Q96RY7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
IFT140Q96RY7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
IFT140Q96RY7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
IFT140Q96RY7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC31.44■■■□□ 2.62
IFT140Q96RY7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
IFT140Q96RY7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
IFT140Q96RY7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC31.43■■■□□ 2.62
IFT140Q96RY7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC31.43■■■□□ 2.62
IFT140Q96RY7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC31.43■■■□□ 2.62
IFT140Q96RY7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
IFT140Q96RY7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC31.43■■■□□ 2.62
IFT140Q96RY7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 MIR940-201ENST00000401276 94 ntBASIC31.42■■■□□ 2.62
IFT140Q96RY7 GPX1P2-201ENST00000429271 606 ntBASIC31.42■■■□□ 2.62
IFT140Q96RY7 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
IFT140Q96RY7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC31.42■■■□□ 2.62
IFT140Q96RY7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
IFT140Q96RY7 RPSAP43-201ENST00000402237 625 ntBASIC31.41■■■□□ 2.62
IFT140Q96RY7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 AC010327.4-202ENST00000591484 748 ntBASIC31.41■■■□□ 2.62
IFT140Q96RY7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
IFT140Q96RY7 AL109659.2-201ENST00000606809 1674 ntBASIC31.41■■■□□ 2.62
IFT140Q96RY7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 HNRNPA1P28-201ENST00000424481 961 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 FGFR3P6-201ENST00000457012 610 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 MINOS1P3-201ENST00000457048 203 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 IGHV3-22-201ENST00000520721 359 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
IFT140Q96RY7 HNRNPDP1-201ENST00000439535 754 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 SCARNA2-201ENST00000458748 420 ntBASIC31.4■■■□□ 2.62
IFT140Q96RY7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC31.4■■■□□ 2.62
IFT140Q96RY7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC31.4■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms