Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 GK-202ENST00000378941 458 ntTSL 3 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 FGFR3P6-201ENST00000457012 610 ntBASIC19.28■□□□□ 0.68
TTC28Q96AY4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TTC28Q96AY4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.28■□□□□ 0.68
TTC28Q96AY4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.27■□□□□ 0.68
TTC28Q96AY4 MIR6752-201ENST00000618442 71 ntBASIC19.27■□□□□ 0.68
TTC28Q96AY4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TTC28Q96AY4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TTC28Q96AY4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TTC28Q96AY4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TTC28Q96AY4 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TTC28Q96AY4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.27■□□□□ 0.67
TTC28Q96AY4 AC015922.1-201ENST00000421102 1152 ntBASIC19.27■□□□□ 0.67
TTC28Q96AY4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.27■□□□□ 0.67
TTC28Q96AY4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.27■□□□□ 0.67
TTC28Q96AY4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.27■□□□□ 0.67
TTC28Q96AY4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC092474.2-201ENST00000424288 719 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AL008721.1-201ENST00000609964 604 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 AJ011932.1-201ENST00000621707 465 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC245100.3-201ENST00000441281 285 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC124864.1-201ENST00000623408 392 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 AC008735.5-201ENST00000623544 497 ntBASIC19.26■□□□□ 0.67
TTC28Q96AY4 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.26■□□□□ 0.67
TTC28Q96AY4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 MIR4469-201ENST00000583919 79 ntBASIC19.25■□□□□ 0.67
TTC28Q96AY4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 RN7SL606P-201ENST00000472779 293 ntBASIC19.25■□□□□ 0.67
TTC28Q96AY4 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 IGHV3-41-201ENST00000613121 348 ntBASIC19.25■□□□□ 0.67
TTC28Q96AY4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TTC28Q96AY4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
TTC28Q96AY4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 TREX1-205ENST00000625293 1783 ntBASIC19.24■□□□□ 0.67
TTC28Q96AY4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TTC28Q96AY4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.24■□□□□ 0.67
TTC28Q96AY4 ALG1L5P-201ENST00000482043 771 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms