Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.5■■□□□ 1.03
ERCC4Q92889 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.5■■□□□ 1.03
ERCC4Q92889 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
ERCC4Q92889 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ERCC4Q92889 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.5■■□□□ 1.03
ERCC4Q92889 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
ERCC4Q92889 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 AC093525.10-201ENST00000625130 1569 ntBASIC21.49■■□□□ 1.03
ERCC4Q92889 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.49■■□□□ 1.03
ERCC4Q92889 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.49■■□□□ 1.03
ERCC4Q92889 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
ERCC4Q92889 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.49■■□□□ 1.03
ERCC4Q92889 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
ERCC4Q92889 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.49■■□□□ 1.03
ERCC4Q92889 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
ERCC4Q92889 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ERCC4Q92889 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
ERCC4Q92889 AC090164.3-201ENST00000610780 2143 ntBASIC21.49■■□□□ 1.03
ERCC4Q92889 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
ERCC4Q92889 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.48■■□□□ 1.03
ERCC4Q92889 Z98044.1-201ENST00000632503 1764 ntBASIC21.48■■□□□ 1.03
ERCC4Q92889 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.48■■□□□ 1.03
ERCC4Q92889 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
ERCC4Q92889 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.48■■□□□ 1.03
ERCC4Q92889 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
ERCC4Q92889 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ERCC4Q92889 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
ERCC4Q92889 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.47■■□□□ 1.03
ERCC4Q92889 AC135050.7-201ENST00000624508 2218 ntBASIC21.47■■□□□ 1.03
ERCC4Q92889 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
ERCC4Q92889 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ERCC4Q92889 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.47■■□□□ 1.03
ERCC4Q92889 UNC93B4-201ENST00000505679 747 ntBASIC21.47■■□□□ 1.03
ERCC4Q92889 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.47■■□□□ 1.03
ERCC4Q92889 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.47■■□□□ 1.03
ERCC4Q92889 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.47■■□□□ 1.03
ERCC4Q92889 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.47■■□□□ 1.03
ERCC4Q92889 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ERCC4Q92889 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.47■■□□□ 1.03
ERCC4Q92889 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.46■■□□□ 1.03
ERCC4Q92889 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.46■■□□□ 1.03
ERCC4Q92889 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.46■■□□□ 1.03
ERCC4Q92889 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 AL390961.4-201ENST00000623958 2535 ntBASIC21.46■■□□□ 1.03
ERCC4Q92889 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.46■■□□□ 1.03
ERCC4Q92889 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ERCC4Q92889 AC142086.2-201ENST00000569753 217 ntBASIC21.46■■□□□ 1.03
ERCC4Q92889 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.46■■□□□ 1.03
ERCC4Q92889 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.46■■□□□ 1.03
ERCC4Q92889 AC133041.1-202ENST00000642053 222 ntBASIC21.46■■□□□ 1.03
ERCC4Q92889 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms