Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 MESTP1-201ENST00000404287 994 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 TSPY21P-201ENST00000433481 731 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 TSPY23P-201ENST00000440136 739 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 AL355355.2-201ENST00000442321 338 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 AC026471.5-201ENST00000615068 467 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SKA3Q8IX90 FSCN1P1-201ENST00000568912 1481 ntBASIC16.77■□□□□ 0.28
SKA3Q8IX90 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.77■□□□□ 0.28
SKA3Q8IX90 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SKA3Q8IX90 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SKA3Q8IX90 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SKA3Q8IX90 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.77■□□□□ 0.27
SKA3Q8IX90 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 SNORA78-201ENST00000459373 127 ntBASIC16.76■□□□□ 0.27
SKA3Q8IX90 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 AC093827.2-201ENST00000512654 315 ntBASIC16.76■□□□□ 0.27
SKA3Q8IX90 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.76■□□□□ 0.27
SKA3Q8IX90 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SKA3Q8IX90 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 AC116562.2-201ENST00000507042 360 ntBASIC16.75■□□□□ 0.27
SKA3Q8IX90 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms