Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP54Q70EL1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 RN7SL510P-201ENST00000581311 263 ntBASIC25.31■■□□□ 1.64
USP54Q70EL1 AC011498.5-201ENST00000592027 486 ntBASIC25.31■■□□□ 1.64
USP54Q70EL1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC25.31■■□□□ 1.64
USP54Q70EL1 GPR32P1-201ENST00000601788 811 ntBASIC25.31■■□□□ 1.64
USP54Q70EL1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
USP54Q70EL1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.31■■□□□ 1.64
USP54Q70EL1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.31■■□□□ 1.64
USP54Q70EL1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC25.3■■□□□ 1.64
USP54Q70EL1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
USP54Q70EL1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP54Q70EL1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC25.3■■□□□ 1.64
USP54Q70EL1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC25.3■■□□□ 1.64
USP54Q70EL1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC25.3■■□□□ 1.64
USP54Q70EL1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC25.3■■□□□ 1.64
USP54Q70EL1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC25.3■■□□□ 1.64
USP54Q70EL1 AC008556.1-201ENST00000610908 2040 ntBASIC25.3■■□□□ 1.64
USP54Q70EL1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC25.3■■□□□ 1.64
USP54Q70EL1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP54Q70EL1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC25.3■■□□□ 1.64
USP54Q70EL1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC25.3■■□□□ 1.64
USP54Q70EL1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP54Q70EL1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC25.29■■□□□ 1.64
USP54Q70EL1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 KRT8P10-201ENST00000450021 1447 ntBASIC25.29■■□□□ 1.64
USP54Q70EL1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC25.29■■□□□ 1.64
USP54Q70EL1 AL732292.2-201ENST00000609649 430 ntBASIC25.29■■□□□ 1.64
USP54Q70EL1 KRT8P32-201ENST00000512863 1461 ntBASIC25.29■■□□□ 1.64
USP54Q70EL1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP54Q70EL1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.29■■□□□ 1.64
USP54Q70EL1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC25.28■■□□□ 1.64
USP54Q70EL1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.28■■□□□ 1.64
USP54Q70EL1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
USP54Q70EL1 UBQLN4P1-201ENST00000461599 1801 ntBASIC25.28■■□□□ 1.64
USP54Q70EL1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC25.28■■□□□ 1.64
USP54Q70EL1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 AC026396.1-201ENST00000419388 421 ntBASIC25.28■■□□□ 1.64
USP54Q70EL1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC25.28■■□□□ 1.64
USP54Q70EL1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
USP54Q70EL1 AC068587.9-201ENST00000641814 219 ntBASIC25.28■■□□□ 1.64
USP54Q70EL1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
USP54Q70EL1 KRT18P1-202ENST00000452408 1331 ntBASIC25.28■■□□□ 1.64
USP54Q70EL1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC25.28■■□□□ 1.64
USP54Q70EL1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
USP54Q70EL1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP54Q70EL1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
USP54Q70EL1 MTMR9LP-203ENST00000426597 1545 ntBASIC25.27■■□□□ 1.64
USP54Q70EL1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 TSPY22P-201ENST00000427496 604 ntBASIC25.27■■□□□ 1.64
USP54Q70EL1 KRT17P6-201ENST00000453795 1220 ntBASIC25.27■■□□□ 1.64
USP54Q70EL1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC25.27■■□□□ 1.64
USP54Q70EL1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC25.27■■□□□ 1.64
USP54Q70EL1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC25.27■■□□□ 1.64
USP54Q70EL1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC25.27■■□□□ 1.64
USP54Q70EL1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC25.27■■□□□ 1.64
USP54Q70EL1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
USP54Q70EL1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP54Q70EL1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC25.26■■□□□ 1.63
USP54Q70EL1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC25.26■■□□□ 1.63
USP54Q70EL1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
USP54Q70EL1 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
USP54Q70EL1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC25.26■■□□□ 1.63
USP54Q70EL1 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC25.26■■□□□ 1.63
USP54Q70EL1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP54Q70EL1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms