Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNFT1Q5M7Z0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 KRT8P3-201ENST00000519669 1449 ntBASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 LINC01311-201ENST00000565162 1445 ntBASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 SPDYE13P-201ENST00000445314 798 ntBASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 VENTXP5-201ENST00000523979 775 ntBASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 ZNF444P1-201ENST00000559497 298 ntBASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNFT1Q5M7Z0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 AC024243.1-201ENST00000609234 778 ntBASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.07■□□□□ 0.32
RNFT1Q5M7Z0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AL158211.5-201ENST00000623583 2518 ntBASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AC092597.1-201ENST00000487352 616 ntBASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 AC093458.2-201ENST00000623150 629 ntBASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RNFT1Q5M7Z0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MCCD1P1-208ENST00000445732 328 ntBASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 RASA4DP-201ENST00000460726 1199 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms