Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.73■□□□□ 0.75
CDH6P55285 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.73■□□□□ 0.75
CDH6P55285 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CDH6P55285 AC091390.4-202ENST00000476426 537 ntBASIC19.73■□□□□ 0.75
CDH6P55285 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.73■□□□□ 0.75
CDH6P55285 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.73■□□□□ 0.75
CDH6P55285 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.73■□□□□ 0.75
CDH6P55285 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH6P55285 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.72■□□□□ 0.75
CDH6P55285 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CDH6P55285 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 AC004951.3-201ENST00000418645 1148 ntBASIC19.72■□□□□ 0.75
CDH6P55285 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH6P55285 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.72■□□□□ 0.75
CDH6P55285 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CDH6P55285 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.72■□□□□ 0.75
CDH6P55285 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CDH6P55285 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH6P55285 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH6P55285 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.71■□□□□ 0.75
CDH6P55285 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH6P55285 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH6P55285 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CDH6P55285 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.71■□□□□ 0.75
CDH6P55285 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.71■□□□□ 0.75
CDH6P55285 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH6P55285 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CDH6P55285 AC026271.3-201ENST00000571884 352 ntBASIC19.71■□□□□ 0.75
CDH6P55285 AC011298.2-201ENST00000617989 482 ntBASIC19.71■□□□□ 0.75
CDH6P55285 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH6P55285 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH6P55285 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CDH6P55285 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
CDH6P55285 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.7■□□□□ 0.74
CDH6P55285 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.7■□□□□ 0.74
CDH6P55285 FAM197Y1-201ENST00000421178 764 ntBASIC19.7■□□□□ 0.74
CDH6P55285 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH6P55285 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH6P55285 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CDH6P55285 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms